DoriC database

DoriC accession number ORI10010060
Organism Thermoanaerobacter tengcongensis MB4
RefSeq NC_003869.1
Topology Circular
Lineage Bacteria, Firmicutes, Clostridia, Thermoanaerobacteriales, Thermoanaerobacteriaceae, Thermoanaerobacter.
Chromosome size 2689445 nt
Chromosome GC content 0.3757
OriC length 484 nt
OriC AT content 0.7211
The number of DnaA box 12
The location of oriC region 2689326..364 nt
The location of dnaA gene 365..1696 nt
The extremes of GC disparity 2689369 nt (minimum), 1346207 nt (maximum)
Note -
OriC Sequence

cactacccctcctagaacctaaaaaatgctataaaaattataacgttaattggatatgatgtcaacaaagactTTATCAACAggtcagaaaTTATCTACAggaagaTGTAGATAAaaaattttttcttattgataatcTGTTGATAAtttgctattatagaagtaaaccTGTTGATAActtaaataaattgtagccacaaatataacaacTTATTCACAggtTGTTGATAAgttTGTGGATAAgttgttatttcagtgttaatggacctattttatttttaaaaaacggcgataggtcaatttttttgtcgcattttttatatacagctattTTATCAACAggaccttgaaaactgttttttcaaaaagcgatttcaacaaaattaaaaattacTTATCCACAaaatagttgTGTCGATAAtatagtatgccaccctttttaattaaaTTATCCACAttattctttagcctaggaggtcataca

The information of repeat
The following lines contain repeats found, one line each.
[1] - repeat length of the first part
[2] - starting position of the first part
[4] - repeat length of the second part
[5] - starting position of the second part
[6] - distance of this repeat
[7] - calculated evalue of this repeat
[8] - repeat sequence

For more details, please refer to The Manual of REPuter.

17 202 P 17 234 -1 1.96e-04 ataacaacttat[tc]caca
13 232 P 13 392 0 9.82e-04 tttgtggataagt
15 323 C 15 412 -1 2.76e-03 acagctatt[ta]tatca
12 72 F 12 331 0 3.93e-03 tttatcaacagg
12 73 P 12 166 0 3.93e-03 ttatcaacaggt
12 113 P 12 113 0 3.93e-03 aaaaaatttttt
14 106 P 14 312 -1 1.03e-02 tgta[gt]ataaaaaat
14 323 R 14 327 -1 1.03e-02 aca[ga]ctattttatc
11 113 R 11 275 0 1.57e-02 aaaaaattttt
11 114 C 11 275 0 1.57e-02 aaaaatttttt
11 167 P 11 332 0 1.57e-02 cctgttgataa
11 179 R 11 179 0 1.57e-02 ttaaataaatt
11 330 C 11 402 0 1.57e-02 ttttatcaaca
11 382 R 11 382 0 1.57e-02 attaaaaatta
13 31 R 13 378 -1 3.83e-02 taaaaatta[ta]aac
13 88 P 13 137 -1 3.83e-02 aaattatc[ta]acag
13 111 C 13 273 -1 3.83e-02 ataaaaa[at]ttttt
13 113 C 13 356 -1 3.83e-02 aaaaaa[tg]tttttc
13 134 F 13 165 -1 3.83e-02 aa[tc]ctgttgataa
13 221 F 13 233 -1 3.83e-02 ttgt[tg]gataagtt
10 19 P 10 310 0 6.28e-02 taaaaaatgc
10 72 C 10 403 0 6.28e-02 tttatcaaca
10 73 P 10 137 0 6.28e-02 ttatcaacag
10 137 P 10 332 0 6.28e-02 ctgttgataa
10 275 P 10 275 0 6.28e-02 tttttaaaaa
10 379 R 10 379 0 6.28e-02 aaaattaaaa
10 438 P 10 438 0 6.28e-02 tttaattaaa
12 57 F 12 370 -1 1.41e-01 gat[gt]tcaacaaa
12 88 F 12 445 -1 1.41e-01 aaattatc[tc]aca
12 91 F 12 332 -1 1.41e-01 ttatc[ta]acagga
12 105 C 12 322 -1 1.41e-01 atgt[ac]gataaaa
12 113 R 12 356 -1 1.41e-01 aaaaa[ac]tttttt
12 138 F 12 222 -1 1.41e-01 tgttgataa[tg]tt
12 138 P 12 445 -1 1.41e-01 tgt[tg]gataattt
12 169 F 12 222 -1 1.41e-01 tgttgataa[cg]tt
12 221 P 12 392 -1 1.41e-01 ttgt[tg]gataagt
12 234 P 12 445 -1 1.41e-01 tgtggataa[gt]tt
12 270 C 12 380 -1 1.41e-01 ttt[ta]atttttaa
12 275 P 12 355 -1 1.41e-01 tttt[tg]aaaaaac
12 298 R 12 353 -1 1.41e-01 aa[tc]ttttttgtc
9 30 C 9 273 0 2.51e-01 ataaaaatt
9 31 F 9 384 0 2.51e-01 taaaaatta
9 73 P 9 222 0 2.51e-01 ttatcaaca
9 91 P 9 106 0 2.51e-01 ttatctaca
9 103 R 9 103 0 2.51e-01 agatgtaga
9 111 P 9 312 0 2.51e-01 ataaaaaat
9 122 R 9 457 0 2.51e-01 tttcttatt
9 138 R 9 404 0 2.51e-01 tgttgataa
9 150 C 9 415 0 2.51e-01 gctattata
9 169 R 9 404 0 2.51e-01 tgttgataa

Refseq NC_003869.1
Legend Figure1 shows the Z-curves for the original sequence. Figure2 shows the Z-curves for the rotated sequence beginning and ending in dif site or the maximum of the GC disparity curve. Short vertical red line indicates the indicator gene (such as dnaA, dnaN, gidA, hemE etc) location, and short up vertical dark blue arrow indicates the identified oriC location, short down vertical brown arrow indicates dif site location. Purple peaks with the diamonds indicates the DnaA box clusters.
Figure 1
zcurve
Figure 2
zcurve

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