DoriC database

DoriC accession number ORI10010059
Organism Thermoanaerobacter tengcongensis MB4
RefSeq NC_003869.1
Topology Circular
Lineage Bacteria, Firmicutes, Clostridia, Thermoanaerobacteriales, Thermoanaerobacteriaceae, Thermoanaerobacter.
Chromosome size 2689445 nt
Chromosome GC content 0.3757
OriC length 237 nt
OriC AT content 0.7257
The number of DnaA box 3
The location of oriC region 1697..1933 nt
The location of dnaA gene 365..1696 nt
The extremes of GC disparity 2689369 nt (minimum), 1346207 nt (maximum)
Note -
OriC Sequence

catataaacagggataaccttgtttatatgttttaaaattcgccttcTGTGAATAATGTCGATAAtttttaaagtttgtcctcattTTATCCACAttattaaaaccacacatcacaacctataaatcttatactaacaaattcacaatctctactcttactactactagattttgttgtacaaaaatattatatgctaggccttcaaaaaatattctcaaaaacaggagtgaaaaat

The information of repeat
The following lines contain repeats found, one line each.
[1] - repeat length of the first part
[2] - starting position of the first part
[4] - repeat length of the second part
[5] - starting position of the second part
[6] - distance of this repeat
[7] - calculated evalue of this repeat
[8] - repeat sequence

For more details, please refer to The Manual of REPuter.

14 51 P 14 86 -1 2.47e-03 aataatgt[cg]gataa
14 74 C 14 220 -1 2.47e-03 tttgtcctca[tc]ttt
13 0 P 13 17 -1 9.18e-03 catataaaca[ga]gg
9 63 R 9 63 0 6.03e-02 aatttttaa
9 181 F 9 206 0 6.03e-02 aaaaatatt
11 94 R 11 180 -1 1.24e-01 attat[ta]aaaac
11 172 P 11 175 -1 1.24e-01 tt[gt]ttgtacaa
8 30 P 8 30 0 2.41e-01 ttttaaaa
8 32 R 8 32 0 2.41e-01 ttaaaatt
8 61 C 8 96 0 2.41e-01 ataatttt
8 157 F 8 160 0 2.41e-01 tactacta
8 185 R 8 185 0 2.41e-01 atattata
10 22 P 10 115 -1 4.52e-01 tttata[tg]gtt
10 30 F 10 66 -1 4.52e-01 ttttaaa[ag]tt
10 30 P 10 63 -1 4.52e-01 ttt[ta]aaaatt
10 99 C 10 169 -1 4.52e-01 taaaac[ca]aca
10 122 F 10 183 -1 4.52e-01 aaat[ca]ttata
10 122 R 10 210 -1 4.52e-01 aa[ac]tcttata
7 0 P 7 188 0 9.64e-01 catataa
7 5 F 7 220 0 9.64e-01 aaacagg
7 5 C 7 74 0 9.64e-01 aaacagg
7 19 C 7 134 0 9.64e-01 ttgttta
7 23 F 7 188 0 9.64e-01 ttatatg
7 27 C 7 178 0 9.64e-01 atgtttt
7 28 R 7 169 0 9.64e-01 tgtttta
7 29 P 7 98 0 9.64e-01 gttttaa
7 31 P 7 66 0 9.64e-01 tttaaaa
7 47 P 7 139 0 9.64e-01 tgtgaat
7 94 R 7 94 0 9.64e-01 attatta
7 146 R 7 146 0 9.64e-01 atctcta
7 152 R 7 212 0 9.64e-01 actctta
7 179 R 7 218 0 9.64e-01 acaaaaa
7 203 F 7 216 0 9.64e-01 tcaaaaa
7 217 R 7 217 0 9.64e-01 caaaaac
9 1 R 9 179 -1 1.63e+00 ata[ta]aaaca
9 19 C 9 205 -1 1.63e+00 tt[gt]tttata
9 20 C 9 179 -1 1.63e+00 tgttt[at]tat
9 25 P 9 205 -1 1.63e+00 atat[gt]tttt
9 28 R 9 70 -1 1.63e+00 tgttt[tg]aaa
9 30 C 9 182 -1 1.63e+00 tttta[at]aat
9 31 R 9 68 -1 1.63e+00 ttt[ag]aaatt
9 31 C 9 63 -1 1.63e+00 tt[ta]aaaatt
9 47 P 9 86 -1 1.63e+00 tgtg[ag]ataa
9 48 F 9 228 -1 1.63e+00 gtgaa[ta]aat
9 61 P 9 183 -1 1.63e+00 ataat[ta]ttt
9 61 P 9 205 -1 1.63e+00 ata[at]ttttt
9 64 F 9 94 -1 1.63e+00 att[ta]ttaaa
9 65 P 9 201 -1 1.63e+00 ttttt[ag]aag
9 95 R 9 206 -1 1.63e+00 ttat[ta]aaaa
9 111 F 9 141 -1 1.63e+00 tcacaa[ct]ct

Refseq NC_003869.1
Legend Figure1 shows the Z-curves for the original sequence. Figure2 shows the Z-curves for the rotated sequence beginning and ending in dif site or the maximum of the GC disparity curve. Short vertical red line indicates the indicator gene (such as dnaA, dnaN, gidA, hemE etc) location, and short up vertical dark blue arrow indicates the identified oriC location, short down vertical brown arrow indicates dif site location. Purple peaks with the diamonds indicates the DnaA box clusters.
Figure 1
zcurve
Figure 2
zcurve

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