DoriC database

DoriC accession number ORI10010058
Organism Streptococcus pyogenes MGAS8232
RefSeq NC_003485.1
Topology Circular
Lineage Bacteria, Firmicutes, Lactobacillales, Streptococcaceae, Streptococcus.
Chromosome size 1895017 nt
Chromosome GC content 0.3855
OriC length 202 nt
OriC AT content 0.6782
The number of DnaA box 6
The location of oriC region 1895017..201 nt
The location of dnaA gene 202..1557 nt
The extremes of GC disparity 2790 nt (minimum), 954760 nt (maximum)
Note -
OriC Sequence

cttgttgatattctgttttttcttttttagTTTTCCACAtaaaaaatagttgaaaacaatagcggtgtcaccttaaaatggcTTTTCCACAggtTGTGGAGAActcaagttaacagtgttaatttaTTTTCCACAggtTGTGGAAAActagaatagtttatggtagaatagttctagaaTTATCCACAagaaggaacctagt

The information of repeat
The following lines contain repeats found, one line each.
[1] - repeat length of the first part
[2] - starting position of the first part
[4] - repeat length of the second part
[5] - starting position of the second part
[6] - distance of this repeat
[7] - calculated evalue of this repeat
[8] - repeat sequence

For more details, please refer to The Manual of REPuter.

23 82 F 23 126 -1 1.13e-08 ttttccacaggttgtgga[ga]aact
13 15 R 13 15 0 1.71e-04 ttttttctttttt
15 24 P 15 138 -1 4.81e-04 tt[tc]tagttttccaca
13 109 P 13 109 -1 6.67e-03 ttaaca[gc]tgttaa
10 38 R 10 38 0 1.09e-02 ataaaaaata
10 148 F 10 163 0 1.09e-02 tagaatagtt
12 167 P 12 171 -1 2.46e-02 ata[ga]ttctagaa
9 30 F 9 126 0 4.38e-02 ttttccaca
9 30 F 9 82 0 4.38e-02 ttttccaca
9 82 P 9 138 0 4.38e-02 ttttccaca
9 100 R 9 100 0 4.38e-02 gaactcaag
9 126 P 9 138 0 4.38e-02 ttttccaca
11 28 P 11 94 -1 9.03e-02 agtt[tc]tccaca
10 0 P 10 180 -1 3.28e-01 cttgt[tg]gata
10 93 P 10 179 -1 3.28e-01 ttgtgga[gt]aa
10 125 F 10 178 -1 3.28e-01 att[ta]tccaca
10 137 P 10 179 -1 3.28e-01 ttgtgga[at]aa
7 3 R 7 45 0 7.00e-01 gttgata
7 22 C 7 40 0 7.00e-01 tttttta
7 22 P 7 39 0 7.00e-01 tttttta
7 44 F 7 166 0 7.00e-01 aatagtt
7 44 F 7 151 0 7.00e-01 aatagtt
7 122 R 7 122 0 7.00e-01 tttattt
7 147 F 7 173 0 7.00e-01 ctagaat
9 10 F 9 19 -1 1.18e+00 ttct[gt]tttt
9 10 R 9 15 -1 1.18e+00 ttct[gt]tttt
9 12 P 9 40 -1 1.18e+00 ct[ga]tttttt
9 29 P 9 48 -1 1.18e+00 gttttc[ca]ac
9 30 F 9 179 -1 1.18e+00 tt[ta]tccaca
9 40 F 9 53 -1 1.18e+00 aaa[ac]aatag
9 44 R 9 47 -1 1.18e+00 aa[ta]agttga
9 48 F 9 139 -1 1.18e+00 gt[tg]gaaaac
9 63 P 9 63 -1 1.18e+00 ggtg[ta]cacc
9 82 F 9 179 -1 1.18e+00 tt[ta]tccaca
9 82 P 9 94 -1 1.18e+00 tt[tc]tccaca
9 94 P 9 126 -1 1.18e+00 tgtgga[ga]aa
6 4 R 6 167 0 2.80e+00 ttgata
6 4 R 6 152 0 2.80e+00 ttgata
6 8 P 6 164 0 2.80e+00 tattct
6 8 P 6 149 0 2.80e+00 tattct
6 13 P 6 52 0 2.80e+00 tgtttt
6 15 F 6 22 0 2.80e+00 tttttt
6 15 R 6 15 0 2.80e+00 tttttt
6 15 C 6 40 0 2.80e+00 tttttt
6 22 R 6 22 0 2.80e+00 tttttt
6 27 F 6 153 0 2.80e+00 tagttt
6 32 R 6 68 0 2.80e+00 ttccac
6 33 P 6 94 0 2.80e+00 tccaca
6 37 P 6 156 0 2.80e+00 cataaa
6 38 C 6 124 0 2.80e+00 ataaaa

Refseq NC_003485.1
Legend Figure1 shows the Z-curves for the original sequence. Figure2 shows the Z-curves for the rotated sequence beginning and ending in dif site or the maximum of the GC disparity curve. Short vertical red line indicates the indicator gene (such as dnaA, dnaN, gidA, hemE etc) location, and short up vertical dark blue arrow indicates the identified oriC location, short down vertical brown arrow indicates dif site location. Purple peaks with the diamonds indicates the DnaA box clusters.
Figure 1
zcurve
Figure 2
zcurve

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