DoriC database

DoriC accession number ORI10010057
Organism Streptococcus pyogenes MGAS8232
RefSeq NC_003485.1
Topology Circular
Lineage Bacteria, Firmicutes, Lactobacillales, Streptococcaceae, Streptococcus.
Chromosome size 1895017 nt
Chromosome GC content 0.3855
OriC length 151 nt
OriC AT content 0.7086
The number of DnaA box 3
The location of oriC region 1558..1708 nt
The location of dnaA gene 202..1557 nt
The extremes of GC disparity 2790 nt (minimum), 954760 nt (maximum)
Note -
OriC Sequence

caTGTGGAAAAgaatatcttttatgaaatagTTATCCACAagttgtgaacaaccatttagtcttggattctctcgtttatttagagTTATCCACTatatacacaagacctactactacttattattatacttattaaataaaggagttctc

The information of repeat
The following lines contain repeats found, one line each.
[1] - repeat length of the first part
[2] - starting position of the first part
[4] - repeat length of the second part
[5] - starting position of the second part
[6] - distance of this repeat
[7] - calculated evalue of this repeat
[8] - repeat sequence

For more details, please refer to The Manual of REPuter.

10 29 F 10 84 0 6.12e-03 agttatccac
12 71 P 12 134 -1 1.38e-02 ctc[gc]tttattta
9 115 F 9 127 0 2.45e-02 tacttatta
9 119 R 9 119 0 2.45e-02 tattattat
11 36 P 11 36 -1 5.05e-02 cacaa[gc]ttgtg
11 130 P 11 130 -1 5.05e-02 ttatt[at]aataa
8 75 P 8 134 0 9.79e-02 tttattta
8 108 F 8 111 0 9.79e-02 ctactact
8 118 R 8 118 0 9.79e-02 ttattatt
10 20 F 10 130 -1 1.83e-01 ttat[gt]aaata
10 32 F 10 96 -1 1.83e-01 tat[ca]cacaag
7 75 R 7 75 0 3.91e-01 tttattt
7 75 C 7 135 0 3.91e-01 tttattt
7 118 F 7 121 0 3.91e-01 ttattat
7 135 R 7 135 0 3.91e-01 aaataaa
9 2 P 9 31 -1 6.60e-01 tgtgga[at]aa
6 6 R 6 6 0 1.57e+00 gaaaag
6 7 P 6 16 0 1.57e+00 aaaaga
6 21 C 6 126 0 1.57e+00 tatgaa
6 24 R 6 137 0 1.57e+00 gaaata
6 36 F 6 100 0 1.57e+00 cacaag
6 37 R 6 45 0 1.57e+00 acaagt
6 54 F 6 78 0 1.57e+00 atttag
6 59 P 6 102 0 1.57e+00 gtcttg
6 94 P 6 94 0 1.57e+00 tatata
6 120 R 6 130 0 1.57e+00 attatt
6 121 F 6 130 0 1.57e+00 ttatta
6 122 R 6 122 0 1.57e+00 tattat
8 2 R 8 139 -1 2.35e+00 tg[ta]ggaaa
8 3 P 8 86 -1 2.35e+00 gtgga[at]aa
8 9 C 8 121 -1 2.35e+00 aa[gt]aatat
8 16 F 8 72 -1 2.35e+00 tc[tg]tttat
8 16 P 8 137 -1 2.35e+00 tc[tc]tttat
8 19 C 8 25 -1 2.35e+00 tttat[gc]aa
8 25 P 8 50 -1 2.35e+00 aaat[ag]gtt
8 27 F 8 126 -1 2.35e+00 ata[gc]ttat
8 33 R 8 103 -1 2.35e+00 atcca[cg]aa
8 34 C 8 141 -1 2.35e+00 tcc[at]caag
8 77 R 8 82 -1 2.35e+00 tatt[tg]aga
8 83 F 8 143 -1 2.35e+00 gagtt[ac]tc
8 94 F 8 96 -1 2.35e+00 tata[tc]aca
7 2 R 7 39 -1 8.22e+00 tgt[gt]gaa
7 4 C 7 15 -1 8.22e+00 t[ga]gaaaa
7 4 C 7 51 -1 8.22e+00 tgg[at]aaa
7 7 R 7 9 -1 8.22e+00 a[at]aagaa
7 8 R 7 21 -1 8.22e+00 aaag[at]at
7 8 P 7 66 -1 8.22e+00 a[ag]agaat
7 9 C 7 118 -1 8.22e+00 aa[gt]aata
7 9 C 7 115 -1 8.22e+00 a[at]gaata
7 9 C 7 127 -1 8.22e+00 a[at]gaata

Refseq NC_003485.1
Legend Figure1 shows the Z-curves for the original sequence. Figure2 shows the Z-curves for the rotated sequence beginning and ending in dif site or the maximum of the GC disparity curve. Short vertical red line indicates the indicator gene (such as dnaA, dnaN, gidA, hemE etc) location, and short up vertical dark blue arrow indicates the identified oriC location, short down vertical brown arrow indicates dif site location. Purple peaks with the diamonds indicates the DnaA box clusters.
Figure 1
zcurve
Figure 2
zcurve

About
People
Publication
History
TUBIC
School of Science
Tianjin University, 300072
No. 92 Weijin Road
Nankai District, Tianjin
China
Tel: +86-22-27402697

Copyright © TUBIC, Tianjin University, Tianjin, China