DoriC database

DoriC accession number ORI10010056
Organism Corynebacterium glutamicum ATCC 13032
RefSeq NC_003450.1
Topology Circular
Lineage Bacteria, Actinobacteria, Actinobacteridae, Actinomycetales, Corynebacterineae, Corynebacteriaceae, Corynebacterium.
Chromosome size 3309401 nt
Chromosome GC content 0.5381
OriC length 848 nt
OriC AT content 0.5354
The number of DnaA box 6
The location of oriC region 3308554..3309401 nt
The location of dnaA gene 1..1575 nt
The extremes of GC disparity 3306188 nt (minimum), 1563137 nt (maximum)
Note -
OriC Sequence

gtgaaacactcctaaatattttgttgacggatcaccggacacaccggttctagtggacaaagtgcgcgaagatttccgcgctagccctataccgggggaacggatcacccaacgttggatgattttttttgagattgcagattcgtgaatgaaaccgcagcaacgctttatggaaagtgttgctctcaagcacattcgttgcgcctggaaatttgaccaagaggtttggacaaagatccgggagtcacacgatgtgacagactggtttagcttacgggaaaacgacctgcgaaaacaaatctgtcctttggcaattcggcgggggcacccgtaattacaaagctggcattaaacactggtgagagggcatatcgcccgtccaaacgcttttcgacgccaccctccggcaaactccactcggcaaagaattcacaggggttggacatgtggattgaactgcgggtaacaatgaaaattgcacacagcatcaacagcctgtgaaaacttcaaccTGTGGATAAcaggtaatgttcaccttgagatcaagggaaacattcaaataactgcaggtgagagcgaatttgaggttgatgcacaTTTTCCACAggtagtgcgctatccTGTGGATAAacgtttttgggaaaagTTATCCACAgcTGTGGACAAcattgtggaaacaatggttatgggcgtttttcgatgtgaatggagctgtagaaacatcgagaacgcccaCGTGGATAAcaaagcggaattttgccctgctttttagcttctccgccacccttcatccacggctgaataaaattatttttcgatagtttcgccaaaaggagatacctaacata

The information of repeat
The following lines contain repeats found, one line each.
[1] - repeat length of the first part
[2] - starting position of the first part
[4] - repeat length of the second part
[5] - starting position of the second part
[6] - distance of this repeat
[7] - calculated evalue of this repeat
[8] - repeat sequence

For more details, please refer to The Manual of REPuter.

18 645 P 18 649 -1 1.59e-04 gtt[ag]tccacagctgtgga
15 103 P 15 108 -1 8.48e-03 atca[ct]ccaacgttgg
11 510 F 11 619 0 4.82e-02 cctgtggataa
11 511 P 11 645 0 4.82e-02 ctgtggataac
10 26 F 10 99 0 1.93e-01 acggatcacc
10 513 F 10 736 0 1.93e-01 gtggataaca
10 620 P 10 646 0 1.93e-01 ctgtggataa
12 218 R 12 221 -1 4.34e-01 aa[gc]aggtttgga
12 509 P 12 597 -1 4.34e-01 acctgtgga[ta]aa
12 511 F 12 656 -1 4.34e-01 ctgtgga[tc]aaca
9 53 F 9 226 0 7.72e-01 tggacaaag
9 394 F 9 778 0 7.72e-01 cgccaccct
9 462 R 9 462 0 7.72e-01 gtaacaatg
9 645 P 9 736 0 7.72e-01 gttatccac
9 692 F 9 810 0 7.72e-01 tttttcgat
11 98 R 11 413 -1 1.59e+00 aacgg[ac]tcacc
11 158 P 11 173 -1 1.59e+00 agcaac[ga]cttt
11 179 P 11 535 -1 1.59e+00 ttg[ca]tctcaag
11 285 F 11 494 -1 1.59e+00 cctg[ct]gaaaac
11 318 C 11 729 -1 1.59e+00 gcggg[gt]gcacc
11 381 C 11 635 -1 1.59e+00 aaac[gc]cttttc
11 597 P 11 619 -1 1.59e+00 tt[ta]tccacagg
11 648 F 11 789 -1 1.59e+00 atccac[ag]gctg
11 741 C 11 817 -1 1.59e+00 ta[at]caaagcgg
11 803 P 11 803 -1 1.59e+00 aaaat[ta]atttt
8 0 R 8 56 0 3.09e+00 gtgaaaca
8 13 P 8 13 0 3.09e+00 aaatattt
8 52 F 8 658 0 3.09e+00 gtggacaa
8 122 R 8 122 0 3.09e+00 tttttttt
8 153 R 8 391 0 3.09e+00 accgcagc
8 158 C 8 195 0 3.09e+00 agcaacgc
8 161 F 8 382 0 3.09e+00 aacgcttt
8 223 P 8 377 0 3.09e+00 gtttggac
8 229 R 8 714 0 3.09e+00 acaaagat
8 249 F 8 697 0 3.09e+00 cgatgtga
8 265 F 8 767 0 3.09e+00 tttagctt
8 287 C 8 383 0 3.09e+00 tgcgaaaa
8 328 C 8 344 0 3.09e+00 ccgtaatt
8 330 P 8 330 0 3.09e+00 gtaattac
8 334 R 8 548 0 3.09e+00 ttacaaag
8 357 F 8 568 0 3.09e+00 ggtgagag
8 385 R 8 385 0 3.09e+00 gcttttcg
8 408 C 8 580 0 3.09e+00 aaactcca
8 428 P 8 494 0 3.09e+00 ttcacagg
8 437 C 8 507 0 3.09e+00 gttggaca
8 457 R 8 685 0 3.09e+00 tgcgggta
8 461 R 8 675 0 3.09e+00 ggtaacaa
8 484 P 8 586 0 3.09e+00 gcatcaac
8 502 R 8 502 0 3.09e+00 aacttcaa
8 598 P 8 669 0 3.09e+00 tttccaca

Refseq NC_003450.1
Legend Figure1 shows the Z-curves for the original sequence. Figure2 shows the Z-curves for the rotated sequence beginning and ending in dif site or the maximum of the GC disparity curve. Short vertical red line indicates the indicator gene (such as dnaA, dnaN, gidA, hemE etc) location, and short up vertical dark blue arrow indicates the identified oriC location, short down vertical brown arrow indicates dif site location. Purple peaks with the diamonds indicates the DnaA box clusters.
Figure 1
zcurve
Figure 2
zcurve

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