DoriC database

DoriC accession number ORI10010055
Organism Corynebacterium glutamicum ATCC 13032
RefSeq NC_003450.1
Topology Circular
Lineage Bacteria, Actinobacteria, Actinobacteridae, Actinomycetales, Corynebacterineae, Corynebacteriaceae, Corynebacterium.
Chromosome size 3309401 nt
Chromosome GC content 0.5381
OriC length 716 nt
OriC AT content 0.5712
The number of DnaA box 8
The location of oriC region 1576..2291 nt
The location of dnaA gene 1..1575 nt
The extremes of GC disparity 3306188 nt (minimum), 1563137 nt (maximum)
Note -
OriC Sequence

gacctgtttagcgtggcgctaaattacaaaatttagctctgctgctcttgaagacccatcttcggatgggtctttttgtaatttaggggttgtgcagggatttTGTGGATAActtccgataaaagcccagctcacaaagTTATCCACAaccTTATTCACAgcagtgtaattacaaacttgtaattcagtgagctttgtcacaggaaatgtgattccgcggaactttccgccctgtgcacaactccccaaaaatTGGGGATAAgctggggatacatctgcacagacTGGGGATAAaatccgtaccttgaaatCTATCCACAgatagacaaagTTATCCACAatcaattcacaacccagttcacacgccagaattccgcgactaccttgtaaaacaatggtCTATCCACAgtttcaacaggacttactgttattaccaattttttacctagaaattaactaaaagaaagagggggtggggagaaagcttcgtgggtgagctcaatgctcacgaaacttcagcgaaagcctcgaggaaattgaaattacaaattccagatccgcgaggaacacaggtaggttgggtttgtgtaattcggactgaagccacctggagggtgaaccttcttccaagaagttttccctatcggtaaacgtccgggtttagttaaacgatgaactatatttgatctatatttcccaaggagctttaaaacagc

The information of repeat
The following lines contain repeats found, one line each.
[1] - repeat length of the first part
[2] - starting position of the first part
[4] - repeat length of the second part
[5] - starting position of the second part
[6] - distance of this repeat
[7] - calculated evalue of this repeat
[8] - repeat sequence

For more details, please refer to The Manual of REPuter.

16 133 F 16 325 0 3.36e-05 acaaagttatccacaa
15 616 R 15 616 0 1.34e-04 gaaccttcttccaag
13 18 P 13 73 0 2.15e-03 ctaaattacaaaa
13 102 P 13 328 0 2.15e-03 ttgtggataactt
13 102 P 13 136 0 2.15e-03 ttgtggataactt
11 310 F 11 398 0 3.44e-02 tctatccacag
11 317 R 11 317 0 3.44e-02 acagatagaca
10 20 F 10 539 0 1.38e-01 aaattacaaa
10 50 P 10 64 0 1.38e-01 aagacccatc
10 74 P 10 539 0 1.38e-01 tttgtaattt
10 164 P 10 164 0 1.38e-01 tgtaattaca
10 212 P 10 212 0 1.38e-01 ttccgcggaa
10 462 R 10 474 0 1.38e-01 gaaagagggg
12 21 F 12 167 -1 3.09e-01 aattacaaa[ac]tt
12 164 F 12 537 -1 3.09e-01 tg[ta]aattacaaa
12 672 F 12 683 -1 3.09e-01 tga[at]ctatattt
9 25 R 9 705 0 5.50e-01 acaaaattt
9 74 P 9 167 0 5.50e-01 tttgtaatt
9 247 P 9 433 0 5.50e-01 aaaaattgg
9 253 F 9 285 0 5.50e-01 tggggataa
9 263 F 9 284 0 5.50e-01 ctggggata
9 452 P 9 659 0 5.50e-01 ttaactaaa
9 469 R 9 469 0 5.50e-01 ggggtgggg
11 18 P 11 177 -1 1.13e+00 ct[ag]aattacaa
11 72 F 11 582 -1 1.13e+00 ttt[tg]tgtaatt
11 75 F 11 177 -1 1.13e+00 ttgtaatt[tc]ag
11 85 P 11 234 -1 1.13e+00 gg[ga]gttgtgca
11 125 F 11 352 -1 1.13e+00 cccag[ct]tcaca
11 134 C 11 408 -1 1.13e+00 caaagtt[ag]tcc
11 164 P 11 536 -1 1.13e+00 tgtaatt[at]caa
11 174 P 11 540 -1 1.13e+00 aa[ct]ttgtaatt
11 177 R 11 418 -1 1.13e+00 ttgt[ac]attcag
11 251 P 11 331 -1 1.13e+00 attg[gt]ggataa
11 300 F 11 442 -1 1.13e+00 tacct[ta]gaaat
11 326 C 11 408 -1 1.13e+00 caaagtt[ag]tcc
8 17 P 8 29 0 2.20e+00 gctaaatt
8 83 R 8 252 0 2.20e+00 taggggtt
8 86 P 8 347 0 2.20e+00 gggttgtg
8 103 P 8 400 0 2.20e+00 tgtggata
8 103 P 8 312 0 2.20e+00 tgtggata
8 140 F 8 312 0 2.20e+00 tatccaca
8 140 F 8 400 0 2.20e+00 tatccaca
8 163 F 8 585 0 2.20e+00 gtgtaatt
8 167 P 8 177 0 2.20e+00 aattacaa
8 178 F 8 586 0 2.20e+00 tgtaattc
8 211 F 8 370 0 2.20e+00 attccgcg
8 218 C 8 302 0 2.20e+00 ggaacttt
8 232 P 8 232 0 2.20e+00 tgtgcaca
8 253 F 8 264 0 2.20e+00 tggggata
8 312 F 8 332 0 2.20e+00 tatccaca

Refseq NC_003450.1
Legend Figure1 shows the Z-curves for the original sequence. Figure2 shows the Z-curves for the rotated sequence beginning and ending in dif site or the maximum of the GC disparity curve. Short vertical red line indicates the indicator gene (such as dnaA, dnaN, gidA, hemE etc) location, and short up vertical dark blue arrow indicates the identified oriC location, short down vertical brown arrow indicates dif site location. Purple peaks with the diamonds indicates the DnaA box clusters.
Figure 1
zcurve
Figure 2
zcurve

About
People
Publication
History
TUBIC
School of Science
Tianjin University, 300072
No. 92 Weijin Road
Nankai District, Tianjin
China
Tel: +86-22-27402697

Copyright © TUBIC, Tianjin University, Tianjin, China