DoriC database

DoriC accession number ORI10010046
Organism Streptomyces avermitilis MA-4680
RefSeq NC_003155.1
Topology Linear
Lineage Bacteria, Actinobacteria, Actinobacteridae, Actinomycetales, Streptomycineae, Streptomycetaceae, Streptomyces.
Chromosome size 9025608 nt
Chromosome GC content 0.7072
OriC length 1090 nt
OriC AT content 0.3596
The number of DnaA box 3
The location of oriC region 5287934..5289023 nt
The location of dnaA gene 3685159..3685857, 5285972..5287933 nt
The extremes of GC disparity 1292877 nt (minimum), 7192660 nt (maximum)
Note -
OriC Sequence

cagccaccgcagcacgtcgctgagggcgccccgggacgattcccgagggcgccctcttcgtcttcccaagggccccttcggcctctccgagggcggcaaggcgtcctccgcctgctgctgccgaaggcccgcttcgaaggcccgctcgctactcccaaaggcccgctcactgcttccgagagcgttcagcgccgttccccaggacgtctttcgccggtcctgaggcgtctttcgccgctctcaaggacgttcttcgccgcttccgaggccgcgtgcggggcgccgacgggccgtgcaccgtccacccgctgttcgaatacgagccgagttacggccgccctccacagatatgcggactttctcgcgtccacaccctggggactgggaagttgtccagatcgtgtccacagggtgtgctgttaaaagaccatcgtcccagctcaacagcttgtggattggtggacagaagatctccacagactgtggacagagtgaTGATCCACAgcctgtgcaccaagttgtccaccggcggcccacaggctgagccccgttgtccccagcaaaacccagcTTCTCCACAcggctgtccactgttcggcaacgcgacgcgcctgctcaccgtgtcgagtgaaaggcgtcacaccaaggtgccgggttggcctgtggggaacgtgggtaaagctggggacggcgttggggagaagtgccccaagcctgtgcatcgagtgtgcagaacttttcgctgtccacagatgaccccggttgtccaccgcctccacccacagggtcagtggacaaaatttggggcctgacctgcgaaaacgaggTTATCCACGgtttccacaggccctactactactcccaactagagagagctgggaatccgcttcgaagggggccctgtgcacaactcgctgtctcggccccggctgccgctcgacgcgacttgacccagggcggcaacgactgtcagtgcggtgcgtcagactggtcaccggtgtcctgcccctcacagggatcgacgacaccgagtcagacgacgaaggccaggcagggcgagagcgccggcaatagcaggaggcggcttacg

The information of repeat
The following lines contain repeats found, one line each.
[1] - repeat length of the first part
[2] - starting position of the first part
[4] - repeat length of the second part
[5] - starting position of the second part
[6] - distance of this repeat
[7] - calculated evalue of this repeat
[8] - repeat sequence

For more details, please refer to The Manual of REPuter.

15 92 C 15 189 -1 1.40e-02 gcggcaagg[cg]gtcct
15 204 F 15 225 -1 1.40e-02 cgtctttcgccg[gc]tc
15 472 P 15 472 -1 1.40e-02 tccacag[at]ctgtgga
12 44 P 12 44 0 1.99e-02 gagggcgccctc
12 121 F 12 134 0 1.99e-02 cgaaggcccgct
12 128 F 12 883 0 1.99e-02 ccgcttcgaagg
12 251 R 12 251 0 1.99e-02 cttcgccgcttc
12 919 R 12 919 0 1.99e-02 tcggccccggct
14 125 P 14 886 -1 5.23e-02 ggccc[gc]cttcgaag
14 136 F 14 157 -1 5.23e-02 aaggcccgctc[ga]ct
14 368 P 14 402 -1 5.23e-02 cacaccctg[gt]ggac
11 101 C 11 1073 0 7.97e-02 cgtcctccgcc
11 517 F 11 761 0 7.97e-02 gttgtccaccg
13 86 F 13 950 -1 1.94e-01 cc[gc]agggcggcaa
13 120 F 13 154 -1 1.94e-01 cc[ga]aaggcccgct
13 472 F 13 498 -1 1.94e-01 tccacag[ac]ctgtg
13 474 P 13 498 -1 1.94e-01 cacag[ag]ctgtgga
10 21 F 10 44 0 3.19e-01 gagggcgccc
10 21 P 10 46 0 3.19e-01 gagggcgccc
10 148 F 10 855 0 3.19e-01 ctactcccaa
10 386 F 10 515 0 3.19e-01 aagttgtcca
10 480 P 10 742 0 3.19e-01 ctgtggacag
10 503 F 10 711 0 3.19e-01 agcctgtgca
12 1 R 12 1019 -1 7.17e-01 agccac[ca]gcagc
12 63 F 12 152 -1 7.17e-01 tcccaa[ga]ggccc
12 101 R 12 106 -1 7.17e-01 cgtc[cg]tccgcct
12 107 P 12 1072 -1 7.17e-01 ccgcct[gc]ctgct
12 111 C 12 1035 -1 7.17e-01 ctgctgct[gt]ccg
9 24 P 9 275 0 1.27e+00 ggcgccccg
9 28 C 9 894 0 1.27e+00 ccccgggac
9 42 F 9 86 0 1.27e+00 ccgagggcg
9 80 R 9 80 0 1.27e+00 gcctctccg
9 88 P 9 333 0 1.27e+00 gagggcggc
9 169 C 9 1038 0 1.27e+00 ctgcttccg
9 171 F 9 258 0 1.27e+00 gcttccgag
9 183 R 9 940 0 1.27e+00 gttcagcgc
9 192 P 9 663 0 1.27e+00 cgttcccca
9 230 F 9 252 0 1.27e+00 ttcgccgct
9 230 R 9 253 0 1.27e+00 ttcgccgct
9 339 F 9 471 0 1.27e+00 ctccacaga
9 340 F 9 745 0 1.27e+00 tccacagat
9 401 F 9 743 0 1.27e+00 tgtccacag
9 401 P 9 480 0 1.27e+00 tgtccacag
9 404 F 9 779 0 1.27e+00 ccacagggt
9 433 P 9 872 0 1.27e+00 tcccagctc
9 458 F 9 482 0 1.27e+00 gtggacaga
9 502 P 9 534 0 1.27e+00 cagcctgtg
9 505 F 9 899 0 1.27e+00 cctgtgcac
9 525 R 9 525 0 1.27e+00 ccggcggcc
9 532 P 9 658 0 1.27e+00 cccacaggc

Refseq NC_003155.1
Legend Figure1 shows the Z-curves for the original sequence. Figure2 shows the Z-curves for the rotated sequence beginning and ending in dif site or the maximum of the GC disparity curve. Short vertical red line indicates the indicator gene (such as dnaA, dnaN, gidA, hemE etc) location, and short up vertical dark blue arrow indicates the identified oriC location, short down vertical brown arrow indicates dif site location. Purple peaks with the diamonds indicates the DnaA box clusters.
Figure 1
zcurve
Figure 2
zcurve

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