DoriC database

DoriC accession number ORI10010043
Organism Clostridium acetobutylicum ATCC 824
RefSeq NC_003030.1
Topology Circular
Lineage Bacteria, Firmicutes, Clostridia, Clostridiales, Clostridiaceae, Clostridium.
Chromosome size 3940880 nt
Chromosome GC content 0.3093
OriC length 565 nt
OriC AT content 0.7699
The number of DnaA box 8
The location of oriC region 3940782..466 nt
The location of dnaA gene 467..1807 nt
The extremes of GC disparity 128 nt (minimum), 1982548 nt (maximum)
Note -
OriC Sequence

gtttacgcacccccttcaatatatttactacgttatagaaatacgttttttccaaattaaagttttactttataattatatatttcaatatagccaatgtcaagaaaaacgattctgccaacctttagcaatgagattttattccttacatattaaatttttcacttcTGTTGATAAaTTATTCACAtaaaaaaaacttttTGTGGATAAtttcttgaatacctacctgtgttttgatattattatgaaagggctgttaataacttttttaaaaacaagTTATACACAatcTGTGCATAActcTGTTGATAActtgtttttaattttattttttttttgtttttattaattattttctcaattcaaattatgtgttaatattattactatagattTGTGGATAActaatttctatagagacacattaacatttTTATGCACAtgtgaatattttttagtgcatatgtcaaaacatctaatgtatacttatttttgtttatatctatgttagtaacttgttgattactttatttaaaataaatttttttagacaggaggatatact

The information of repeat
The following lines contain repeats found, one line each.
[1] - repeat length of the first part
[2] - starting position of the first part
[4] - repeat length of the second part
[5] - starting position of the second part
[6] - distance of this repeat
[7] - calculated evalue of this repeat
[8] - repeat sequence

For more details, please refer to The Manual of REPuter.

16 340 R 16 340 0 2.09e-05 ttttattaattatttt
15 268 P 15 308 0 8.36e-05 ttaaaaacaagttat
15 323 R 15 328 -1 3.76e-03 tttt[ag]tttttttttt
15 335 R 15 483 -1 3.76e-03 tttgtttttatt[ac]at
15 526 P 15 526 -1 3.76e-03 tttattt[at]aaataaa
14 166 F 14 301 -1 1.40e-02 tctgttgataa[ac]tt
14 330 R 14 333 -1 1.40e-02 tt[ta]tttttgttttt
14 526 C 14 534 -1 1.40e-02 tttatttaaaa[ta]aa
11 199 F 11 393 0 2.14e-02 tttgtggataa
13 175 P 13 441 -1 5.22e-02 aaa[ta]tattcacat
13 191 C 13 264 -1 5.22e-02 aaaaa[ca]tttttgt
13 253 F 13 302 -1 5.22e-02 ctgtt[ag]ataactt
13 325 R 13 334 -1 5.22e-02 ttattttt[tg]tttt
13 333 F 13 489 -1 5.22e-02 tttttgttt[ta]tat
10 70 P 10 70 0 8.56e-02 tataattata
10 186 C 10 326 0 8.56e-02 ataaaaaaaa
10 265 P 10 265 0 8.56e-02 tttttaaaaa
10 317 R 10 317 0 8.56e-02 ttttaatttt
10 321 C 10 531 0 8.56e-02 aattttattt
12 153 F 12 174 -1 1.93e-01 taaatt[ta]ttcac
12 175 P 12 201 -1 1.93e-01 aaattat[tc]caca
12 184 P 12 328 -1 1.93e-01 aca[ta]aaaaaaaa
12 228 R 12 387 -1 1.93e-01 gtgttt[ta]gatat
12 233 F 12 374 -1 1.93e-01 tt[ga]atattatta
12 254 F 12 505 -1 1.93e-01 tgtta[ag]taactt
12 258 F 12 535 -1 1.93e-01 aataa[ca]tttttt
12 277 P 12 394 -1 1.93e-01 agttat[ac]cacaa
12 303 F 12 516 -1 1.93e-01 tgttgat[at]actt
12 316 R 12 322 -1 1.93e-01 ttttt[at]atttta
12 325 F 12 486 -1 1.93e-01 ttattttt[tg]ttt
12 434 P 12 438 -1 1.93e-01 tat[gt]cacatgtg
9 14 F 9 83 0 3.42e-01 ttcaatata
9 33 P 9 407 0 3.42e-01 tatagaaat
9 64 F 9 522 0 3.42e-01 ttactttat
9 75 R 9 75 0 3.42e-01 ttatatatt
9 153 F 9 537 0 3.42e-01 taaattttt
9 179 P 9 441 0 3.42e-01 tattcacat
9 188 C 9 330 0 3.42e-01 aaaaaaaac
9 237 R 9 237 0 3.42e-01 tattattat
9 264 R 9 538 0 3.42e-01 ttttttaaa
9 269 C 9 488 0 3.42e-01 taaaaacaa
9 269 P 9 336 0 3.42e-01 taaaaacaa
9 273 P 9 511 0 3.42e-01 aacaagtta
9 281 C 9 368 0 3.42e-01 atacacaat
9 291 P 9 433 0 3.42e-01 tgtgcataa
9 309 F 9 511 0 3.42e-01 taacttgtt
9 313 F 9 336 0 3.42e-01 ttgttttta
9 313 R 9 488 0 3.42e-01 ttgttttta
9 323 R 9 323 0 3.42e-01 ttttatttt
9 328 R 9 328 0 3.42e-01 ttttttttt

Refseq NC_003030.1
Legend Figure1 shows the Z-curves for the original sequence. Figure2 shows the Z-curves for the rotated sequence beginning and ending in dif site or the maximum of the GC disparity curve. Short vertical red line indicates the indicator gene (such as dnaA, dnaN, gidA, hemE etc) location, and short up vertical dark blue arrow indicates the identified oriC location, short down vertical brown arrow indicates dif site location. Purple peaks with the diamonds indicates the DnaA box clusters.
Figure 1
zcurve
Figure 2
zcurve

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