DoriC

DoriC accession number	ORI10010043
Organism	Clostridium acetobutylicum ATCC 824
RefSeq	NC_003030.1
Topology	Circular
Lineage	Bacteria, Firmicutes, Clostridia, Clostridiales, Clostridiaceae, Clostridium.
Chromosome size	3940880 nt
Chromosome GC content	0.3093
OriC length	565 nt
OriC AT content	0.7699
The number of DnaA box	8
The location of oriC region	3940782..466 nt
The location of dnaA gene	467..1807 nt
The extremes of GC disparity	128 nt (minimum), 1982548 nt (maximum)
Note	-
OriC Sequence	gtttacgcacccccttcaatatatttactacgttatagaaatacgttttttccaaattaaagttttactttataattatatatttcaatatagccaatgtcaagaaaaacgattctgccaacctttagcaatgagattttattccttacatattaaatttttcacttcTGTTGATAAaTTATTCACAtaaaaaaaacttttTGTGGATAAtttcttgaatacctacctgtgttttgatattattatgaaagggctgttaataacttttttaaaaacaagTTATACACAatcTGTGCATAActcTGTTGATAActtgtttttaattttattttttttttgtttttattaattattttctcaattcaaattatgtgttaatattattactatagattTGTGGATAActaatttctatagagacacattaacatttTTATGCACAtgtgaatattttttagtgcatatgtcaaaacatctaatgtatacttatttttgtttatatctatgttagtaacttgttgattactttatttaaaataaatttttttagacaggaggatatact
The information of repeat	The following lines contain repeats found, one line each. [1] - repeat length of the first part [2] - starting position of the first part [4] - repeat length of the second part [5] - starting position of the second part [6] - distance of this repeat [7] - calculated evalue of this repeat [8] - repeat sequence For more details, please refer to The Manual of REPuter. 16 340 R 16 340 0 2.09e-05 ttttattaattatttt 15 268 P 15 308 0 8.36e-05 ttaaaaacaagttat 15 323 R 15 328 -1 3.76e-03 tttt[ag]tttttttttt 15 335 R 15 483 -1 3.76e-03 tttgtttttatt[ac]at 15 526 P 15 526 -1 3.76e-03 tttattt[at]aaataaa 14 166 F 14 301 -1 1.40e-02 tctgttgataa[ac]tt 14 330 R 14 333 -1 1.40e-02 tt[ta]tttttgttttt 14 526 C 14 534 -1 1.40e-02 tttatttaaaa[ta]aa 11 199 F 11 393 0 2.14e-02 tttgtggataa 13 175 P 13 441 -1 5.22e-02 aaa[ta]tattcacat 13 191 C 13 264 -1 5.22e-02 aaaaa[ca]tttttgt 13 253 F 13 302 -1 5.22e-02 ctgtt[ag]ataactt 13 325 R 13 334 -1 5.22e-02 ttattttt[tg]tttt 13 333 F 13 489 -1 5.22e-02 tttttgttt[ta]tat 10 70 P 10 70 0 8.56e-02 tataattata 10 186 C 10 326 0 8.56e-02 ataaaaaaaa 10 265 P 10 265 0 8.56e-02 tttttaaaaa 10 317 R 10 317 0 8.56e-02 ttttaatttt 10 321 C 10 531 0 8.56e-02 aattttattt 12 153 F 12 174 -1 1.93e-01 taaatt[ta]ttcac 12 175 P 12 201 -1 1.93e-01 aaattat[tc]caca 12 184 P 12 328 -1 1.93e-01 aca[ta]aaaaaaaa 12 228 R 12 387 -1 1.93e-01 gtgttt[ta]gatat 12 233 F 12 374 -1 1.93e-01 tt[ga]atattatta 12 254 F 12 505 -1 1.93e-01 tgtta[ag]taactt 12 258 F 12 535 -1 1.93e-01 aataa[ca]tttttt 12 277 P 12 394 -1 1.93e-01 agttat[ac]cacaa 12 303 F 12 516 -1 1.93e-01 tgttgat[at]actt 12 316 R 12 322 -1 1.93e-01 ttttt[at]atttta 12 325 F 12 486 -1 1.93e-01 ttattttt[tg]ttt 12 434 P 12 438 -1 1.93e-01 tat[gt]cacatgtg 9 14 F 9 83 0 3.42e-01 ttcaatata 9 33 P 9 407 0 3.42e-01 tatagaaat 9 64 F 9 522 0 3.42e-01 ttactttat 9 75 R 9 75 0 3.42e-01 ttatatatt 9 153 F 9 537 0 3.42e-01 taaattttt 9 179 P 9 441 0 3.42e-01 tattcacat 9 188 C 9 330 0 3.42e-01 aaaaaaaac 9 237 R 9 237 0 3.42e-01 tattattat 9 264 R 9 538 0 3.42e-01 ttttttaaa 9 269 C 9 488 0 3.42e-01 taaaaacaa 9 269 P 9 336 0 3.42e-01 taaaaacaa 9 273 P 9 511 0 3.42e-01 aacaagtta 9 281 C 9 368 0 3.42e-01 atacacaat 9 291 P 9 433 0 3.42e-01 tgtgcataa 9 309 F 9 511 0 3.42e-01 taacttgtt 9 313 F 9 336 0 3.42e-01 ttgttttta 9 313 R 9 488 0 3.42e-01 ttgttttta 9 323 R 9 323 0 3.42e-01 ttttatttt 9 328 R 9 328 0 3.42e-01 ttttttttt

Refseq	NC_003030.1
Legend	Figure1 shows the Z-curves for the original sequence. Figure2 shows the Z-curves for the rotated sequence beginning and ending in dif site or the maximum of the GC disparity curve. Short vertical red line indicates the indicator gene (such as dnaA, dnaN, gidA, hemE etc) location, and short up vertical dark blue arrow indicates the identified oriC location, short down vertical brown arrow indicates dif site location. Purple peaks with the diamonds indicates the DnaA box clusters.
	Figure 1
	Figure 2