DoriC database

DoriC accession number ORI10010042
Organism Clostridium acetobutylicum ATCC 824
RefSeq NC_003030.1
Topology Circular
Lineage Bacteria, Firmicutes, Clostridia, Clostridiales, Clostridiaceae, Clostridium.
Chromosome size 3940880 nt
Chromosome GC content 0.3093
OriC length 256 nt
OriC AT content 0.7617
The number of DnaA box 5
The location of oriC region 1808..2063 nt
The location of dnaA gene 467..1807 nt
The extremes of GC disparity 128 nt (minimum), 1982548 nt (maximum)
Note -
OriC Sequence

taacagttgtttattatttatctataataaatTGTGGATACtttttatattttactttgcatgttaatacTGTTGATAAcgtaaagtagttgttaataaaTTATCCACAgttatttttttcttgcaaaccttgatatttgttgagtTTATCCACTTATCAACAaatccacactccctactactattactacttagtttttattataccttatctacttttctattctttataattgttaataaggaggatattata

The information of repeat
The following lines contain repeats found, one line each.
[1] - repeat length of the first part
[2] - starting position of the first part
[4] - repeat length of the second part
[5] - starting position of the second part
[6] - distance of this repeat
[7] - calculated evalue of this repeat
[8] - repeat sequence

For more details, please refer to The Manual of REPuter.

13 229 R 13 229 0 2.75e-04 ataattgttaata
11 42 R 11 42 0 4.39e-03 ttttatatttt
13 86 F 13 230 -1 1.07e-02 ta[ga]ttgttaataa
10 4 R 10 134 0 1.76e-02 agttgtttat
10 9 R 10 9 0 1.76e-02 tttattattt
12 1 C 12 154 -1 3.96e-02 aa[ct]agttgttta
12 32 P 12 97 -1 3.96e-02 tgtggata[ca]ttt
12 86 R 12 229 -1 3.96e-02 ta[ga]ttgttaata
9 11 C 9 23 0 7.03e-02 tattattta
9 22 P 9 197 0 7.03e-02 tataataaa
9 24 F 9 93 0 7.03e-02 taataaatt
9 70 P 9 154 0 7.03e-02 tgttgataa
9 135 P 9 157 0 7.03e-02 atttgttga
11 40 R 11 110 -1 1.45e-01 cttttt[at]tatt
11 68 P 11 100 -1 1.45e-01 actgt[tg]gataa
11 87 R 11 133 -1 1.45e-01 agttgtt[at]ata
11 109 R 11 113 -1 1.45e-01 gtt[ac]ttttttt
11 153 P 11 233 -1 1.45e-01 cttat[ct]aacaa
8 9 F 8 197 0 2.81e-01 tttattat
8 9 P 8 23 0 2.81e-01 tttattat
8 11 R 8 197 0 2.81e-01 tattattt
8 12 C 8 93 0 2.81e-01 attattta
8 21 C 8 247 0 2.81e-01 ctataata
8 61 F 8 90 0 2.81e-01 tgttaata
8 61 F 8 234 0 2.81e-01 tgttaata
8 61 R 8 229 0 2.81e-01 tgttaata
8 86 C 8 156 0 2.81e-01 tagttgtt
8 100 F 8 146 0 2.81e-01 ttatccac
8 110 R 8 195 0 2.81e-01 ttattttt
8 248 R 8 248 0 2.81e-01 atattata
10 2 F 10 106 -1 5.27e-01 acagtt[ga]ttt
10 4 F 10 87 -1 5.27e-01 agttgtt[ta]at
10 11 F 10 221 -1 5.27e-01 tatt[ac]tttat
10 29 R 10 86 -1 5.27e-01 aattgt[gt]gat
10 38 F 10 192 -1 5.27e-01 ta[cg]tttttat
10 89 P 10 154 -1 5.27e-01 ttgtt[ag]ataa
10 90 C 10 106 -1 5.27e-01 tgt[tc]aataaa
10 146 F 10 208 -1 5.27e-01 ttatc[ct]actt
7 9 P 7 93 0 1.12e+00 tttatta
7 14 R 7 14 0 1.12e+00 tatttat
7 17 F 7 208 0 1.12e+00 ttatcta
7 18 R 7 18 0 1.12e+00 tatctat
7 22 P 7 249 0 1.12e+00 tataata
7 32 P 7 164 0 1.12e+00 tgtggat
7 33 P 7 147 0 1.12e+00 gtggata
7 38 F 7 213 0 1.12e+00 tactttt
7 41 R 7 111 0 1.12e+00 tttttat
7 70 R 7 86 0 1.12e+00 tgttgat
7 82 P 7 212 0 1.12e+00 aaagtag
7 83 P 7 186 0 1.12e+00 aagtagt

Refseq NC_003030.1
Legend Figure1 shows the Z-curves for the original sequence. Figure2 shows the Z-curves for the rotated sequence beginning and ending in dif site or the maximum of the GC disparity curve. Short vertical red line indicates the indicator gene (such as dnaA, dnaN, gidA, hemE etc) location, and short up vertical dark blue arrow indicates the identified oriC location, short down vertical brown arrow indicates dif site location. Purple peaks with the diamonds indicates the DnaA box clusters.
Figure 1
zcurve
Figure 2
zcurve

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