DoriC database

DoriC accession number ORI10010041
Organism Streptococcus pneumoniae TIGR4
RefSeq NC_003028.1
Topology Circular
Lineage Bacteria, Firmicutes, Lactobacillales, Streptococcaceae, Streptococcus.
Chromosome size 2160837 nt
Chromosome GC content 0.397
OriC length 212 nt
OriC AT content 0.7075
The number of DnaA box 5
The location of oriC region 2160822..196 nt
The location of dnaA gene 197..1558 nt
The extremes of GC disparity 2510 nt (minimum), 1093985 nt (maximum)
Note -
OriC Sequence

ggctgttcttttatttttttatctcacaaggTTATCCACTatgtttttcgataaaaagcttaataaatcaataatttcttcttTTATCCCCAaccTGTGGATAAagtttggtaacatTGTGGATTAtttttcacagctTGTGGAAAAttcttgctatctatggtaaaatatctctagtattaaacttttaaatagtaaaggaggagaaagga

The information of repeat
The following lines contain repeats found, one line each.
[1] - repeat length of the first part
[2] - starting position of the first part
[4] - repeat length of the second part
[5] - starting position of the second part
[6] - distance of this repeat
[7] - calculated evalue of this repeat
[8] - repeat sequence

For more details, please refer to The Manual of REPuter.

11 11 R 11 11 0 3.01e-03 tatttttttat
13 71 R 13 74 -1 7.35e-03 ta[at]tttcttcttt
12 5 R 12 8 -1 2.71e-02 tt[ct]ttttatttt
12 33 P 12 112 -1 2.71e-02 atccac[ta]atgtt
12 53 P 12 177 -1 2.71e-02 aaaag[ct]ttaata
9 5 F 9 78 0 4.82e-02 ttcttttat
8 10 F 8 123 0 1.93e-01 ttattttt
8 15 P 8 49 0 1.93e-01 tttttatc
8 31 P 8 96 0 1.93e-01 ttatccac
8 43 C 8 52 0 1.93e-01 tttttcga
8 50 C 8 124 0 1.93e-01 ataaaaag
10 13 F 10 78 -1 3.62e-01 tt[tc]ttttatc
10 13 R 10 38 -1 3.62e-01 ttttt[tg]tatc
10 24 P 10 111 -1 3.62e-01 cacaa[gt]gtta
10 82 P 10 95 -1 3.62e-01 tttatcc[ca]ca
10 99 R 10 185 -1 3.62e-01 gataaa[gt]ttt
10 125 P 10 138 -1 3.62e-01 atttt[tc]caca
10 151 R 10 154 -1 3.62e-01 tg[cg]tatctat
7 8 R 7 123 0 7.72e-01 ttttatt
7 11 C 7 50 0 7.72e-01 tattttt
7 15 R 7 124 0 7.72e-01 tttttat
7 49 P 7 81 0 7.72e-01 gataaaa
7 59 R 7 69 0 7.72e-01 ttaataa
7 60 C 7 122 0 7.72e-01 taataaa
7 70 C 7 177 0 7.72e-01 ataattt
7 95 F 7 117 0 7.72e-01 tgtggat
7 102 P 7 181 0 7.72e-01 aaagttt
7 116 F 7 137 0 7.72e-01 ttgtgga
7 142 C 7 184 0 7.72e-01 gaaaatt
7 169 R 7 169 0 7.72e-01 atctcta
7 198 R 7 198 0 7.72e-01 aggagga
9 5 R 9 71 -1 1.30e+00 ttcttt[ta]at
9 5 F 9 13 -1 1.30e+00 tt[ct]ttttat
9 11 R 9 78 -1 1.30e+00 tatttt[tc]tt
9 11 F 9 39 -1 1.30e+00 tat[tg]ttttt
9 46 R 9 52 -1 1.30e+00 ttcga[ta]aaa
9 47 R 9 164 -1 1.30e+00 tc[gt]ataaaa
9 68 P 9 144 -1 1.30e+00 caa[tg]aattt
9 90 P 9 131 -1 1.30e+00 caa[cg]ctgtg
9 95 F 9 138 -1 1.30e+00 tgtgga[ta]aa
9 108 F 9 160 -1 1.30e+00 tggtaa[ca]at
9 197 R 9 200 -1 1.30e+00 aa[ga]gaggag
6 4 R 6 147 0 3.09e+00 gttctt
6 7 F 6 184 0 3.09e+00 ctttta
6 7 C 6 142 0 3.09e+00 ctttta
6 8 C 6 164 0 3.09e+00 ttttat
6 8 P 6 50 0 3.09e+00 ttttat
6 9 P 6 61 0 3.09e+00 tttatt
6 10 C 6 61 0 3.09e+00 ttattt
6 11 P 6 164 0 3.09e+00 tatttt

Refseq NC_003028.1
Legend Figure1 shows the Z-curves for the original sequence. Figure2 shows the Z-curves for the rotated sequence beginning and ending in dif site or the maximum of the GC disparity curve. Short vertical red line indicates the indicator gene (such as dnaA, dnaN, gidA, hemE etc) location, and short up vertical dark blue arrow indicates the identified oriC location, short down vertical brown arrow indicates dif site location. Purple peaks with the diamonds indicates the DnaA box clusters.
Figure 1
zcurve
Figure 2
zcurve

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