DoriC database

DoriC accession number ORI10010025
Organism Corynebacterium diphtheriae NCTC 13129
RefSeq NC_002935.1
Topology Circular
Lineage Bacteria, Actinobacteria, Actinobacteridae, Actinomycetales, Corynebacterineae, Corynebacteriaceae, Corynebacterium.
Chromosome size 2488635 nt
Chromosome GC content 0.5348
OriC length 608 nt
OriC AT content 0.5345
The number of DnaA box 4
The location of oriC region 1678..2285 nt
The location of dnaA gene 19..1677 nt
The extremes of GC disparity 2472075 nt (minimum), 1248032 nt (maximum)
Note -
OriC Sequence

ttaggctattttcgcagttcagaacgttaagaggctgtaggtggcccctgtggggatacaacacctacagcctctttttatgagcaacacgcgaggataagaaaatatcccacaaaaCTATCCACAggtgtgtaattacagaattgcaattcggtgatctctatcactttccgcggaatatttatacccgcagaccccTGTGTATAAcccgatctaagctgtgtaaaaattagccctgaactggggaaggattgtggagggaatacggcttggaaaagTTATCCACAaccctctatagTTATCCACAgagattccacatccggactcacaactcgaaaaacggccgccaccacgagcgataccctgtcttccacagattccacaggacttactgtagttaccaactatttagtccaaataaacctagggagaaataggggttggggaattacacgacttgctcggcctcgcgagcgaagcgagcgatcttgtaattacaaaaatctggcgaatacgagttttcgttcttggcgttcacaggtacggttagtttttgtaatttcaagaagtcttccgatccgcaggctcctcctcatggcagcgcctac

The information of repeat
The following lines contain repeats found, one line each.
[1] - repeat length of the first part
[2] - starting position of the first part
[4] - repeat length of the second part
[5] - starting position of the second part
[6] - distance of this repeat
[7] - calculated evalue of this repeat
[8] - repeat sequence

For more details, please refer to The Manual of REPuter.

19 466 R 19 469 -1 2.16e-05 ct[ca]gcgagcgaagcgagcg
15 28 P 15 61 0 9.68e-05 aagaggctgtaggtg
17 486 P 17 550 -1 3.09e-04 tcttg[ta]aattacaaaaa
13 412 R 13 412 0 1.55e-03 tccaaataaacct
15 137 P 15 140 -1 4.36e-03 ac[ac]gaattgcaattc
12 435 R 12 435 0 6.20e-03 aggggttgggga
12 488 P 12 488 0 6.20e-03 ttgtaattacaa
11 276 F 11 296 0 2.48e-02 agttatccaca
11 492 P 11 550 0 2.48e-02 aattacaaaaa
13 130 F 13 489 -1 6.04e-02 tgtaattaca[ga]aa
13 278 C 13 432 -1 6.04e-02 ttatcc[ac]caaccc
13 305 F 13 371 -1 6.04e-02 ca[gc]agattccaca
10 22 R 10 139 0 9.92e-02 aacgttaaga
10 130 P 10 130 0 9.92e-02 tgtaattaca
10 130 P 10 489 0 9.92e-02 tgtaattaca
10 168 P 10 168 0 9.92e-02 ttccgcggaa
12 488 F 12 553 -1 2.23e-01 ttgtaatt[at]caa
9 22 C 9 143 0 3.97e-01 aacgttaag
9 58 R 9 280 0 3.97e-01 caacaccta
9 118 F 9 299 0 3.97e-01 tatccacag
9 177 R 9 177 0 3.97e-01 atatttata
9 477 R 9 477 0 3.97e-01 agcgagcga
9 585 R 9 585 0 3.97e-01 ctcctcctc
11 197 P 11 297 -1 8.18e-01 ctgtg[tg]ataac
11 247 P 11 281 -1 8.18e-01 agg[ag]ttgtgga
8 14 P 8 235 0 1.59e+00 cagttcag
8 44 F 8 194 0 1.59e+00 cccctgtg
8 50 R 8 433 0 1.59e+00 tggggata
8 118 F 8 279 0 1.59e+00 tatccaca
8 120 F 8 378 0 1.59e+00 tccacagg
8 129 P 8 446 0 1.59e+00 gtgtaatt
8 301 F 8 369 0 1.59e+00 tccacaga
8 352 F 8 479 0 1.59e+00 cgagcgat
8 368 F 8 377 0 1.59e+00 ttccacag
8 466 P 8 466 0 1.59e+00 ctcgcgag
8 469 F 8 478 0 1.59e+00 gcgagcga
10 3 P 10 100 -1 2.97e+00 gg[ca]tattttc
10 20 R 10 557 -1 2.97e+00 agaac[gt]ttaa
10 20 C 10 486 -1 2.97e+00 agaac[ga]ttaa
10 50 C 10 193 -1 2.97e+00 tgggga[tc]aca
10 113 P 10 544 -1 2.97e+00 aaaacta[ta]cc
10 118 P 10 196 -1 2.97e+00 tat[ca]cacagg
10 125 F 10 216 -1 2.97e+00 ag[gc]tgtgtaa
10 125 C 10 369 -1 2.97e+00 aggtgt[gc]taa
10 130 F 10 554 -1 2.97e+00 tgtaatt[at]ca
10 130 P 10 554 -1 2.97e+00 tg[ta]aattaca
10 131 P 10 391 -1 2.97e+00 gtaa[tc]tacag
10 197 F 10 218 -1 2.97e+00 ctgtgta[ta]aa
10 198 P 10 277 -1 2.97e+00 tgtg[tg]ataac
10 212 C 10 308 -1 2.97e+00 tctaag[cg]tgt

Refseq NC_002935.1
Legend Figure1 shows the Z-curves for the original sequence. Figure2 shows the Z-curves for the rotated sequence beginning and ending in dif site or the maximum of the GC disparity curve. Short vertical red line indicates the indicator gene (such as dnaA, dnaN, gidA, hemE etc) location, and short up vertical dark blue arrow indicates the identified oriC location, short down vertical brown arrow indicates dif site location. Purple peaks with the diamonds indicates the DnaA box clusters.
Figure 1
zcurve
Figure 2
zcurve

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