DoriC

DoriC accession number	ORI10010024
Organism	Legionella pneumophila subsp. pneumophila str. Philadelphia 1
RefSeq	NC_002942.1
Topology	Circular
Lineage	Bacteria, Proteobacteria, Gammaproteobacteria, Legionellales, Legionellaceae, Legionella.
Chromosome size	3397754 nt
Chromosome GC content	0.3827
OriC length	761 nt
OriC AT content	0.7753
The number of DnaA box	4
The location of oriC region	3397647..653 nt
The location of dnaA gene	654..2012 nt
The extremes of GC disparity	223 nt (minimum), 1689267 nt (maximum)
Note	-
OriC Sequence	gataaccctgcttctaaatttatgaggttggcaatgatagataactttttttcaactgtcaatttgaataactgattattttttgtgtaattttttatttacaggtcgtaataatattaactttatatatttttaaaatttatttttattatatacaaactgcttatTGTGGATAAtttaaaaaaatactttgtttttaatagcttacattgattcaaacactgtttgtaactcctttgttttattgtgatttatttgttgtctgtttatctctctaatattgcacatacgttattttatcctttttcacgtatttgaactgtacTTATCCATAgaaaaataaattcaaaataattttattttgttcatattgtatttaaagttatctttttatactggtgttttattagtaaataattatagctaatcgatttttgagtatatttctatttatttaaaaggtttgatcttatttaatttatctaaattatttgtatgtatattaaaatgtagaccctattatggcttTGTGGATAActttgccttttctttaaacccgggtataatttattgattactcagataacatatagattgaaatctttttagattttaaaaaaaattaccaattgataaattcttgttattaatctttattaattgtcttgctgatcgggtactttcaatggcaatatttaatacTGTGGATAGatagttttaagtattcttttaccacacttgtttaaattaggagttatttt
The information of repeat	The following lines contain repeats found, one line each. [1] - repeat length of the first part [2] - starting position of the first part [4] - repeat length of the second part [5] - starting position of the second part [6] - distance of this repeat [7] - calculated evalue of this repeat [8] - repeat sequence For more details, please refer to The Manual of REPuter. 16 66 R 16 401 -1 1.82e-03 aataa[ca]tgattatttt 13 42 R 13 42 0 2.43e-03 aactttttttcaa 15 417 R 15 420 -1 6.83e-03 tt[at]tagctaatcgat 15 484 R 15 492 -1 6.83e-03 aaattat[ta]tgtatgt 12 470 R 12 470 0 9.71e-03 tatttaatttat 12 612 R 12 612 0 9.71e-03 ttaaaaaaaatt 14 328 C 14 380 -1 2.55e-02 tc[ca]atagaaaaata 14 441 R 14 643 -1 2.55e-02 tatttcta[ta]ttatt 11 121 R 11 121 0 3.88e-02 tttatatattt 11 134 R 11 449 0 3.88e-02 aaaatttattt 11 136 P 11 335 0 3.88e-02 aatttattttt 11 139 R 11 139 0 3.88e-02 ttatttttatt 11 603 R 11 603 0 3.88e-02 ttttagatttt 13 72 R 13 398 -1 9.47e-02 tgattatttt[tg]tg 13 129 P 13 606 -1 9.47e-02 tttttaaaat[tc]ta 13 133 C 13 609 -1 9.47e-02 taaaattt[at]tttt 13 166 F 13 527 -1 9.47e-02 ttgtggataa[tc]tt 13 178 P 13 719 -1 9.47e-02 taaaa[ag]aatactt 13 215 P 13 215 -1 9.47e-02 caaaca[cg]tgtttg 13 333 C 13 445 -1 9.47e-02 aga[at]aaataaatt 10 38 P 10 378 0 1.55e-01 agataacttt 10 86 P 10 616 0 1.55e-01 gtaatttttt 10 91 R 10 137 0 1.55e-01 tttttattta 10 91 C 10 335 0 1.55e-01 tttttattta 10 131 R 10 131 0 1.55e-01 tttaaaattt 10 176 F 10 611 0 1.55e-01 tttaaaaaaa 10 236 R 10 356 0 1.55e-01 ttgttttatt 12 50 R 12 53 -1 3.49e-01 tt[ct]aactgtcaa 12 116 R 12 439 -1 3.49e-01 tta[at]ctttatat 12 117 P 12 373 -1 3.49e-01 taacttta[ta]ata 12 125 P 12 176 -1 3.49e-01 tat[at]tttttaaa 12 137 R 12 441 -1 3.49e-01 atttat[tc]tttat 12 173 P 12 738 -1 3.49e-01 taatttaaa[ac]aa 12 175 R 12 613 -1 3.49e-01 att[ta]aaaaaaat 12 176 P 12 447 -1 3.49e-01 tttaaa[at]aaata 12 347 R 12 609 -1 3.49e-01 aaaa[ta]aatttta 12 382 R 12 439 -1 3.49e-01 ttatcttt[ta]tat 12 550 P 12 554 -1 3.49e-01 tta[at]acccgggt 9 15 R 9 372 0 6.21e-01 aaatttatg 9 34 R 9 707 0 6.21e-01 tgatagata 9 39 F 9 532 0 6.21e-01 gataacttt 9 74 R 9 142 0 6.21e-01 attattttt 9 75 R 9 90 0 6.21e-01 ttatttttt 9 177 R 9 615 0 6.21e-01 ttaaaaaaa 9 178 R 9 178 0 6.21e-01 taaaaaaat 9 188 F 9 234 0 6.21e-01 ctttgtttt 9 237 F 9 399 0 6.21e-01 tgttttatt 9 258 R 9 258 0 6.21e-01 ttgtctgtt 9 268 R 9 268 0 6.21e-01 atctctcta 9 332 C 9 599 0 6.21e-01 tagaaaaat

Refseq	NC_002942.1
Legend	Figure1 shows the Z-curves for the original sequence. Figure2 shows the Z-curves for the rotated sequence beginning and ending in dif site or the maximum of the GC disparity curve. Short vertical red line indicates the indicator gene (such as dnaA, dnaN, gidA, hemE etc) location, and short up vertical dark blue arrow indicates the identified oriC location, short down vertical brown arrow indicates dif site location. Purple peaks with the diamonds indicates the DnaA box clusters.
	Figure 1
	Figure 2