DoriC database

DoriC accession number ORI10010024
Organism Legionella pneumophila subsp. pneumophila str. Philadelphia 1
RefSeq NC_002942.1
Topology Circular
Lineage Bacteria, Proteobacteria, Gammaproteobacteria, Legionellales, Legionellaceae, Legionella.
Chromosome size 3397754 nt
Chromosome GC content 0.3827
OriC length 761 nt
OriC AT content 0.7753
The number of DnaA box 4
The location of oriC region 3397647..653 nt
The location of dnaA gene 654..2012 nt
The extremes of GC disparity 223 nt (minimum), 1689267 nt (maximum)
Note -
OriC Sequence

gataaccctgcttctaaatttatgaggttggcaatgatagataactttttttcaactgtcaatttgaataactgattattttttgtgtaattttttatttacaggtcgtaataatattaactttatatatttttaaaatttatttttattatatacaaactgcttatTGTGGATAAtttaaaaaaatactttgtttttaatagcttacattgattcaaacactgtttgtaactcctttgttttattgtgatttatttgttgtctgtttatctctctaatattgcacatacgttattttatcctttttcacgtatttgaactgtacTTATCCATAgaaaaataaattcaaaataattttattttgttcatattgtatttaaagttatctttttatactggtgttttattagtaaataattatagctaatcgatttttgagtatatttctatttatttaaaaggtttgatcttatttaatttatctaaattatttgtatgtatattaaaatgtagaccctattatggcttTGTGGATAActttgccttttctttaaacccgggtataatttattgattactcagataacatatagattgaaatctttttagattttaaaaaaaattaccaattgataaattcttgttattaatctttattaattgtcttgctgatcgggtactttcaatggcaatatttaatacTGTGGATAGatagttttaagtattcttttaccacacttgtttaaattaggagttatttt

The information of repeat
The following lines contain repeats found, one line each.
[1] - repeat length of the first part
[2] - starting position of the first part
[4] - repeat length of the second part
[5] - starting position of the second part
[6] - distance of this repeat
[7] - calculated evalue of this repeat
[8] - repeat sequence

For more details, please refer to The Manual of REPuter.

16 66 R 16 401 -1 1.82e-03 aataa[ca]tgattatttt
13 42 R 13 42 0 2.43e-03 aactttttttcaa
15 417 R 15 420 -1 6.83e-03 tt[at]tagctaatcgat
15 484 R 15 492 -1 6.83e-03 aaattat[ta]tgtatgt
12 470 R 12 470 0 9.71e-03 tatttaatttat
12 612 R 12 612 0 9.71e-03 ttaaaaaaaatt
14 328 C 14 380 -1 2.55e-02 tc[ca]atagaaaaata
14 441 R 14 643 -1 2.55e-02 tatttcta[ta]ttatt
11 121 R 11 121 0 3.88e-02 tttatatattt
11 134 R 11 449 0 3.88e-02 aaaatttattt
11 136 P 11 335 0 3.88e-02 aatttattttt
11 139 R 11 139 0 3.88e-02 ttatttttatt
11 603 R 11 603 0 3.88e-02 ttttagatttt
13 72 R 13 398 -1 9.47e-02 tgattatttt[tg]tg
13 129 P 13 606 -1 9.47e-02 tttttaaaat[tc]ta
13 133 C 13 609 -1 9.47e-02 taaaattt[at]tttt
13 166 F 13 527 -1 9.47e-02 ttgtggataa[tc]tt
13 178 P 13 719 -1 9.47e-02 taaaa[ag]aatactt
13 215 P 13 215 -1 9.47e-02 caaaca[cg]tgtttg
13 333 C 13 445 -1 9.47e-02 aga[at]aaataaatt
10 38 P 10 378 0 1.55e-01 agataacttt
10 86 P 10 616 0 1.55e-01 gtaatttttt
10 91 R 10 137 0 1.55e-01 tttttattta
10 91 C 10 335 0 1.55e-01 tttttattta
10 131 R 10 131 0 1.55e-01 tttaaaattt
10 176 F 10 611 0 1.55e-01 tttaaaaaaa
10 236 R 10 356 0 1.55e-01 ttgttttatt
12 50 R 12 53 -1 3.49e-01 tt[ct]aactgtcaa
12 116 R 12 439 -1 3.49e-01 tta[at]ctttatat
12 117 P 12 373 -1 3.49e-01 taacttta[ta]ata
12 125 P 12 176 -1 3.49e-01 tat[at]tttttaaa
12 137 R 12 441 -1 3.49e-01 atttat[tc]tttat
12 173 P 12 738 -1 3.49e-01 taatttaaa[ac]aa
12 175 R 12 613 -1 3.49e-01 att[ta]aaaaaaat
12 176 P 12 447 -1 3.49e-01 tttaaa[at]aaata
12 347 R 12 609 -1 3.49e-01 aaaa[ta]aatttta
12 382 R 12 439 -1 3.49e-01 ttatcttt[ta]tat
12 550 P 12 554 -1 3.49e-01 tta[at]acccgggt
9 15 R 9 372 0 6.21e-01 aaatttatg
9 34 R 9 707 0 6.21e-01 tgatagata
9 39 F 9 532 0 6.21e-01 gataacttt
9 74 R 9 142 0 6.21e-01 attattttt
9 75 R 9 90 0 6.21e-01 ttatttttt
9 177 R 9 615 0 6.21e-01 ttaaaaaaa
9 178 R 9 178 0 6.21e-01 taaaaaaat
9 188 F 9 234 0 6.21e-01 ctttgtttt
9 237 F 9 399 0 6.21e-01 tgttttatt
9 258 R 9 258 0 6.21e-01 ttgtctgtt
9 268 R 9 268 0 6.21e-01 atctctcta
9 332 C 9 599 0 6.21e-01 tagaaaaat

Refseq NC_002942.1
Legend Figure1 shows the Z-curves for the original sequence. Figure2 shows the Z-curves for the rotated sequence beginning and ending in dif site or the maximum of the GC disparity curve. Short vertical red line indicates the indicator gene (such as dnaA, dnaN, gidA, hemE etc) location, and short up vertical dark blue arrow indicates the identified oriC location, short down vertical brown arrow indicates dif site location. Purple peaks with the diamonds indicates the DnaA box clusters.
Figure 1
zcurve
Figure 2
zcurve

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