DoriC database

DoriC accession number ORI10010022
Organism Chlorobium tepidum TLS
RefSeq NC_002932.1
Topology Circular
Lineage Bacteria, Chlorobi, Chlorobia, Chlorobiales, Chlorobiaceae, Chlorobaculum.
Chromosome size 2154946 nt
Chromosome GC content 0.5653
OriC length 405 nt
OriC AT content 0.6123
The number of DnaA box 3
The location of oriC region 2880..3284 nt
The location of dnaA gene 1398..2879 nt
The extremes of GC disparity 2154845 nt (minimum), 1025871 nt (maximum)
Note -
OriC Sequence

gggaattggctgtgagatgcgttgtttcggtgattcatcaacattttctgtttacaaggtacggctttcggtggacaaaaaacaatcctgcttctgatttttggggtggatgaagcctcttttgcttacgaacatatcaacattctatctcttttatttattgtggtttatctgttttcttgtaaaagttgtcaacatgtgttgatgcctctccgcatcggtcttgcttgggtttgggcagtttagtgtttttTTATCCACAacTTATCAACAcTGTGGATAGgttgtggggttgatggtgttggtaagtgcgagaaatgtggcatctcttgtttatctgtgactaaaatgataaattgaaagtcctgtaattttaaacaatcattcgagaggagttttgaagag

The information of repeat
The following lines contain repeats found, one line each.
[1] - repeat length of the first part
[2] - starting position of the first part
[4] - repeat length of the second part
[5] - starting position of the second part
[6] - distance of this repeat
[7] - calculated evalue of this repeat
[8] - repeat sequence

For more details, please refer to The Manual of REPuter.

10 74 R 10 74 0 4.40e-02 acaaaaaaca
10 165 F 10 331 0 4.40e-02 gtttatctgt
12 70 P 12 249 -1 9.90e-02 gtgga[ct]aaaaaa
12 130 F 12 261 -1 9.90e-02 aac[at]tatcaaca
12 257 P 12 278 -1 9.90e-02 ccacaac[tc]tatc
12 262 P 12 298 -1 9.90e-02 actta[tc]caacac
12 389 R 12 393 -1 9.90e-02 gag[ga]agttttga
9 36 F 9 135 0 1.76e-01 atcaacatt
9 39 C 9 179 0 1.76e-01 aacattttc
9 62 R 9 62 0 1.76e-01 ggctttcgg
9 153 R 9 153 0 1.76e-01 ttatttatt
9 206 R 9 206 0 1.76e-01 gcctctccg
9 229 R 9 229 0 1.76e-01 gggtttggg
9 276 R 9 276 0 1.76e-01 tggataggt
11 101 F 11 287 -1 3.63e-01 tggggt[gt]gatg
11 123 R 11 377 -1 3.63e-01 gcttac[gt]aaca
8 24 F 8 65 0 7.04e-01 tttcggtg
8 35 P 8 199 0 7.04e-01 catcaaca
8 50 P 8 178 0 7.04e-01 tttacaag
8 74 C 8 246 0 7.04e-01 acaaaaaa
8 76 P 8 246 0 7.04e-01 aaaaaaca
8 79 F 8 375 0 7.04e-01 aaacaatc
8 93 C 8 341 0 7.04e-01 ctgatttt
8 100 R 8 286 0 7.04e-01 ttggggtg
8 134 F 8 265 0 7.04e-01 tatcaaca
8 198 P 8 266 0 7.04e-01 gtgttgat
8 254 P 8 274 0 7.04e-01 tatccaca
8 282 R 8 297 0 7.04e-01 ggttgtgg
8 369 R 8 369 0 7.04e-01 aattttaa
10 43 F 10 167 -1 1.32e+00 tt[ta]tctgttt
10 73 C 10 93 -1 1.32e+00 gac[at]aaaaac
10 110 F 10 202 -1 1.32e+00 tga[at]gcctct
10 124 P 10 299 -1 1.32e+00 cttac[gc]aaca
10 145 F 10 168 -1 1.32e+00 tatct[cg]tttt
10 182 C 10 370 -1 1.32e+00 taaaa[gt]ttgt
10 260 P 10 349 -1 1.32e+00 caa[ct]ttatca
10 299 C 10 377 -1 1.32e+00 tgtt[ga]gtaag
7 13 P 7 322 0 2.82e+00 gagatgc
7 35 P 7 291 0 2.82e+00 catcaac
7 36 F 7 266 0 2.82e+00 atcaaca
7 37 F 7 191 0 2.82e+00 tcaacat
7 39 R 7 50 0 2.82e+00 aacattt
7 42 R 7 149 0 2.82e+00 attttct
7 73 C 7 171 0 2.82e+00 gacaaaa
7 116 F 7 148 0 2.82e+00 ctctttt
7 117 R 7 173 0 2.82e+00 tcttttg
7 135 P 7 199 0 2.82e+00 atcaaca
7 136 F 7 191 0 2.82e+00 tcaacat
7 143 R 7 143 0 2.82e+00 tctatct
7 146 F 7 324 0 2.82e+00 atctctt

Refseq NC_002932.1
Legend Figure1 shows the Z-curves for the original sequence. Figure2 shows the Z-curves for the rotated sequence beginning and ending in dif site or the maximum of the GC disparity curve. Short vertical red line indicates the indicator gene (such as dnaA, dnaN, gidA, hemE etc) location, and short up vertical dark blue arrow indicates the identified oriC location, short down vertical brown arrow indicates dif site location. Purple peaks with the diamonds indicates the DnaA box clusters.
Figure 1
zcurve
Figure 2
zcurve

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