DoriC database

DoriC accession number ORI10010021
Organism Chlorobium tepidum TLS
RefSeq NC_002932.1
Topology Circular
Lineage Bacteria, Chlorobi, Chlorobia, Chlorobiales, Chlorobiaceae, Chlorobaculum.
Chromosome size 2154946 nt
Chromosome GC content 0.5653
OriC length 271 nt
OriC AT content 0.6162
The number of DnaA box 3
The location of oriC region 1127..1397 nt
The location of dnaA gene 1398..2879 nt
The extremes of GC disparity 2154845 nt (minimum), 1025871 nt (maximum)
Note -
OriC Sequence

cttcttacaatctttatttttatataaaagatttgttgttgttgttgagcttgtggaaatctggacaggggagcaatgagactcattaaaatgttattttataatacgttgtgttcttaatttctcttccatcttcTGTGGATAGtgtgtttatttccctccacagggcagttgacggtttgttggtgatttcatgcggcaaccccacagTGTTGATAActcccctgaaatcaagattgcgccaacaggttttgaacaggTTATACACAgg

The information of repeat
The following lines contain repeats found, one line each.
[1] - repeat length of the first part
[2] - starting position of the first part
[4] - repeat length of the second part
[5] - starting position of the second part
[6] - distance of this repeat
[7] - calculated evalue of this repeat
[8] - repeat sequence

For more details, please refer to The Manual of REPuter.

17 29 R 17 32 -1 6.13e-05 ga[tg]ttgttgttgttgtt
13 34 R 13 34 0 3.08e-04 gttgttgttgttg
12 17 P 12 17 0 1.23e-03 ttttatataaaa
12 32 F 12 35 0 1.23e-03 ttgttgttgttg
12 166 R 12 166 0 1.23e-03 ggcagttgacgg
11 32 R 11 32 0 4.92e-03 ttgttgttgtt
13 74 P 13 74 -1 1.20e-02 aatgag[at]ctcatt
10 37 R 10 37 0 1.97e-02 gttgttgttg
12 7 P 12 227 -1 4.43e-02 caatctt[tg]attt
9 14 R 9 14 0 7.88e-02 tatttttat
9 32 F 9 38 0 7.88e-02 ttgttgttg
11 86 C 11 95 -1 1.63e-01 taaaat[ga]ttat
8 11 R 8 149 0 3.15e-01 ctttattt
8 32 R 8 32 0 3.15e-01 ttgttgtt
8 65 P 8 219 0 3.15e-01 caggggag
8 94 R 8 94 0 3.15e-01 tattttat
8 186 P 8 225 0 3.15e-01 tgatttca
8 243 F 8 254 0 3.15e-01 aacaggtt
10 9 R 10 12 -1 5.91e-01 at[ct]tttattt
10 23 C 10 94 -1 5.91e-01 ataaaa[gt]att
10 31 F 10 178 -1 5.91e-01 tttgttg[tg]tg
10 38 F 10 179 -1 5.91e-01 ttgttg[tg]tga
10 114 P 10 226 -1 5.91e-01 tctt[ag]atttc
10 163 P 10 217 -1 5.91e-01 caggg[cg]agtt
10 244 R 10 248 -1 5.91e-01 aca[ga]gttttg
7 4 C 7 89 0 1.26e+00 ttacaat
7 8 P 7 26 0 1.26e+00 aatcttt
7 12 F 7 149 0 1.26e+00 tttattt
7 13 F 7 93 0 1.26e+00 ttatttt
7 17 F 7 96 0 1.26e+00 ttttata
7 22 P 7 96 0 1.26e+00 tataaaa
7 40 R 7 40 0 1.26e+00 gttgttg
7 62 R 7 62 0 1.26e+00 ggacagg
7 108 R 7 108 0 1.26e+00 ttgtgtt
7 121 R 7 121 0 1.26e+00 ttctctt
7 135 P 7 159 0 1.26e+00 ctgtgga
7 149 R 7 149 0 1.26e+00 tttattt
9 10 R 9 116 -1 2.13e+00 tcttta[ta]tt
9 10 F 9 114 -1 2.13e+00 tctt[ta]attt
9 34 R 9 179 -1 2.13e+00 gt[tg]gttgtt
9 35 F 9 179 -1 2.13e+00 ttgttg[tg]tg
9 37 R 9 179 -1 2.13e+00 gt[tg]gttgtt
9 64 F 9 162 -1 2.13e+00 acaggg[gc]ag
9 135 P 9 261 -1 2.13e+00 ctgtg[gt]ata
9 194 F 9 237 -1 2.13e+00 tgcg[gc]caac
9 217 R 9 220 -1 2.13e+00 aa[cg]tcccct
6 1 F 6 113 0 5.04e+00 ttctta
6 12 R 6 93 0 5.04e+00 tttatt
6 14 R 6 96 0 5.04e+00 tatttt
6 14 C 6 23 0 5.04e+00 tatttt

Refseq NC_002932.1
Legend Figure1 shows the Z-curves for the original sequence. Figure2 shows the Z-curves for the rotated sequence beginning and ending in dif site or the maximum of the GC disparity curve. Short vertical red line indicates the indicator gene (such as dnaA, dnaN, gidA, hemE etc) location, and short up vertical dark blue arrow indicates the identified oriC location, short down vertical brown arrow indicates dif site location. Purple peaks with the diamonds indicates the DnaA box clusters.
Figure 1
zcurve
Figure 2
zcurve

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