DoriC database

DoriC accession number ORI10010020
Organism Mycoplasma pulmonis UAB CTIP
RefSeq NC_002771.1
Topology Circular
Lineage Bacteria, Firmicutes, Mollicutes, Mycoplasmataceae, Mycoplasma.
Chromosome size 963879 nt
Chromosome GC content 0.2664
OriC length 221 nt
OriC AT content 0.8326
The number of DnaA box 3
The location of oriC region 1..221 nt
The location of dnaA gene 222..1607 nt
The extremes of GC disparity 963862 nt (minimum), 465406 nt (maximum)
Note -
OriC Sequence

tttttaaattattacaaataaaagtttttttgttgttattttctcaattttaaaaaacTTATCCAAAagtaaactatgttaataatttgtttatatttttTGTTGATAAgtacttaaaagctcaataaaaccaagtatttttTGTGGATAAatctatctgaatttcactaatttatcaactaaaaaattatttttatcttttttaactatactttaaaact

The information of repeat
The following lines contain repeats found, one line each.
[1] - repeat length of the first part
[2] - starting position of the first part
[4] - repeat length of the second part
[5] - starting position of the second part
[6] - distance of this repeat
[7] - calculated evalue of this repeat
[8] - repeat sequence

For more details, please refer to The Manual of REPuter.

16 93 F 16 135 -1 1.54e-04 tattttttgt[tg]gataa
14 95 P 14 172 -1 2.15e-03 ttttt[ta]gttgataa
13 24 R 13 29 -1 7.98e-03 tttt[ta]ttgttgtt
13 25 F 13 95 -1 7.98e-03 ttttttgttg[ta]ta
13 182 P 13 182 -1 7.98e-03 aaaaat[ta]attttt
10 106 P 10 106 0 1.31e-02 taagtactta
12 86 R 12 89 -1 2.95e-02 tt[gt]tttatattt
12 89 F 12 192 -1 2.95e-02 tttat[ac]tttttt
9 5 P 9 79 0 5.24e-02 aaattatta
9 21 P 9 51 0 5.24e-02 aagtttttt
9 23 R 9 23 0 5.24e-02 gtttttttg
9 78 R 9 78 0 5.24e-02 ttaataatt
9 84 R 9 84 0 5.24e-02 atttgttta
9 188 R 9 188 0 5.24e-02 tatttttat
11 1 P 11 208 -1 1.08e-01 ttttaaa[tg]tat
11 18 C 11 46 -1 1.08e-01 taaaa[gt]ttttt
11 24 P 11 176 -1 1.08e-01 tttttt[ta]gttg
11 80 P 11 181 -1 1.08e-01 aataattt[gt]tt
11 89 R 11 190 -1 1.08e-01 ttt[ac]tattttt
11 148 R 11 152 -1 1.08e-01 taa[ag]tctatct
8 0 P 8 48 0 2.10e-01 tttttaaa
8 5 F 8 184 0 2.10e-01 aaattatt
8 6 C 8 78 0 2.10e-01 aattatta
8 16 C 8 35 0 2.10e-01 aataaaag
8 25 F 8 137 0 2.10e-01 ttttttgt
8 34 C 8 122 0 2.10e-01 gttatttt
8 43 R 8 200 0 2.10e-01 tcaatttt
8 45 R 8 45 0 2.10e-01 aattttaa
8 47 P 8 47 0 2.10e-01 ttttaaaa
8 49 R 8 181 0 2.10e-01 ttaaaaaa
8 49 P 8 198 0 2.10e-01 ttaaaaaa
8 50 C 8 94 0 2.10e-01 taaaaaac
8 50 C 8 136 0 2.10e-01 taaaaaac
8 101 P 8 172 0 2.10e-01 gttgataa
8 174 R 8 174 0 2.10e-01 atcaacta
8 180 R 8 180 0 2.10e-01 taaaaaat
8 181 C 8 198 0 2.10e-01 aaaaaatt
10 0 R 10 3 -1 3.93e-01 tt[ta]ttaaatt
10 0 R 10 90 -1 3.93e-01 ttttta[at]att
10 0 P 10 45 -1 3.93e-01 tttt[ta]aaatt
10 8 R 10 182 -1 3.93e-01 ttatta[ca]aaa
10 13 C 10 87 -1 3.93e-01 acaaata[at]aa
10 20 C 10 47 -1 3.93e-01 aaa[ga]tttttt
10 21 F 10 132 -1 3.93e-01 aagt[ta]ttttt
10 22 C 10 121 -1 3.93e-01 agtt[ta]ttttg
10 24 F 10 27 -1 3.93e-01 tttt[tg]ttgtt
10 27 R 10 32 -1 3.93e-01 tttt[ga]ttgtt
10 31 R 10 95 -1 3.93e-01 gttgtt[at]ttt
10 47 C 10 183 -1 3.93e-01 ttttaa[at]aaa
10 52 F 10 181 -1 3.93e-01 aaaaa[ca]ttat

Refseq NC_002771.1
Legend Figure1 shows the Z-curves for the original sequence. Figure2 shows the Z-curves for the rotated sequence beginning and ending in dif site or the maximum of the GC disparity curve. Short vertical red line indicates the indicator gene (such as dnaA, dnaN, gidA, hemE etc) location, and short up vertical dark blue arrow indicates the identified oriC location, short down vertical brown arrow indicates dif site location. Purple peaks with the diamonds indicates the DnaA box clusters.
Figure 1
zcurve
Figure 2
zcurve

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