DoriC database

DoriC accession number ORI10010015
Organism Streptococcus pyogenes M1 GAS
RefSeq NC_002737.1
Topology Circular
Lineage Bacteria, Firmicutes, Lactobacillales, Streptococcaceae, Streptococcus.
Chromosome size 1852441 nt
Chromosome GC content 0.3851
OriC length 232 nt
OriC AT content 0.6681
The number of DnaA box 7
The location of oriC region 1852441..231 nt
The location of dnaA gene 232..1587 nt
The extremes of GC disparity 2823 nt (minimum), 978860 nt (maximum)
Note -
OriC Sequence

cttgttgatattctgttttttcttttttagTTTTCCACAtgaaaaatagttgaaaacaatagcggtgtccccttaaaatggcTTTTCCACAggtTGTGGAGAAcccaaattaacagtgttaatttaTTTTCCACAggtTGTGGAAAAactaactattatccatcgttcTGTGGAAAActagaatagtttatggtagaatagttctagaaTTATCCACAagaaggaacctagt

The information of repeat
The following lines contain repeats found, one line each.
[1] - repeat length of the first part
[2] - starting position of the first part
[4] - repeat length of the second part
[5] - starting position of the second part
[6] - distance of this repeat
[7] - calculated evalue of this repeat
[8] - repeat sequence

For more details, please refer to The Manual of REPuter.

21 82 F 21 126 -1 2.17e-07 ttttccacaggttgtgga[ga]aa
19 106 P 19 106 -1 3.14e-06 aaattaaca[gc]tgttaattt
13 15 R 13 15 0 2.26e-04 ttttttctttttt
15 24 P 15 168 -1 6.34e-04 tt[tc]tagttttccaca
10 82 P 10 167 0 1.44e-02 ttttccacag
10 126 P 10 167 0 1.44e-02 ttttccacag
10 178 F 10 193 0 1.44e-02 tagaatagtt
12 148 R 12 152 -1 3.25e-02 cta[ac]ctattatc
12 197 P 12 201 -1 3.25e-02 ata[ga]ttctagaa
9 30 F 9 126 0 5.77e-02 ttttccaca
9 30 F 9 82 0 5.77e-02 ttttccaca
9 30 P 9 138 0 5.77e-02 ttttccaca
9 82 P 9 138 0 5.77e-02 ttttccaca
9 126 P 9 138 0 5.77e-02 ttttccaca
9 138 F 9 168 0 5.77e-02 tgtggaaaa
8 26 P 8 144 0 2.31e-01 ttagtttt
8 154 F 8 208 0 2.31e-01 attatcca
10 0 P 10 210 -1 4.33e-01 cttgt[tg]gata
10 29 P 10 94 -1 4.33e-01 gtt[tc]tccaca
10 33 F 10 212 -1 4.33e-01 tccaca[ta]gaa
10 93 P 10 209 -1 4.33e-01 ttgtgga[gt]aa
10 94 F 10 168 -1 4.33e-01 tgtgga[ga]aac
10 125 F 10 208 -1 4.33e-01 att[ta]tccaca
10 137 P 10 209 -1 4.33e-01 ttgtgga[at]aa
7 3 R 7 45 0 9.24e-01 gttgata
7 44 F 7 196 0 9.24e-01 aatagtt
7 44 F 7 181 0 9.24e-01 aatagtt
7 44 P 7 150 0 9.24e-01 aatagtt
7 63 C 7 86 0 9.24e-01 ggtgtcc
7 63 C 7 130 0 9.24e-01 ggtgtcc
7 101 R 7 101 0 9.24e-01 aacccaa
7 122 R 7 122 0 9.24e-01 tttattt
7 144 F 7 173 0 9.24e-01 aaaacta
7 150 P 7 181 0 9.24e-01 aactatt
7 150 P 7 196 0 9.24e-01 aactatt
7 177 F 7 203 0 9.24e-01 ctagaat
9 0 C 9 142 -1 1.56e+00 ctt[gt]ttgat
9 10 F 9 19 -1 1.56e+00 ttct[gt]tttt
9 10 R 9 15 -1 1.56e+00 ttct[gt]tttt
9 29 P 9 48 -1 1.56e+00 gttttc[ca]ac
9 39 P 9 124 -1 1.56e+00 tg[ag]aaaata
9 40 F 9 172 -1 1.56e+00 gaaaa[ac]tag
9 44 R 9 47 -1 1.56e+00 aa[ta]agttga
9 48 F 9 169 -1 1.56e+00 gt[tg]gaaaac
9 82 F 9 209 -1 1.56e+00 tt[ta]tccaca
9 82 P 9 94 -1 1.56e+00 tt[tc]tccaca
9 94 P 9 126 -1 1.56e+00 tgtgga[ga]aa
9 124 F 9 153 -1 1.56e+00 tatt[ta]tcca
9 168 P 9 209 -1 1.56e+00 tgtgga[at]aa
6 4 R 6 197 0 3.70e+00 ttgata

Refseq NC_002737.1
Legend Figure1 shows the Z-curves for the original sequence. Figure2 shows the Z-curves for the rotated sequence beginning and ending in dif site or the maximum of the GC disparity curve. Short vertical red line indicates the indicator gene (such as dnaA, dnaN, gidA, hemE etc) location, and short up vertical dark blue arrow indicates the identified oriC location, short down vertical brown arrow indicates dif site location. Purple peaks with the diamonds indicates the DnaA box clusters.
Figure 1
zcurve
Figure 2
zcurve

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