DoriC

DoriC accession number	ORI10010015
Organism	Streptococcus pyogenes M1 GAS
RefSeq	NC_002737.1
Topology	Circular
Lineage	Bacteria, Firmicutes, Lactobacillales, Streptococcaceae, Streptococcus.
Chromosome size	1852441 nt
Chromosome GC content	0.3851
OriC length	232 nt
OriC AT content	0.6681
The number of DnaA box	7
The location of oriC region	1852441..231 nt
The location of dnaA gene	232..1587 nt
The extremes of GC disparity	2823 nt (minimum), 978860 nt (maximum)
Note	-
OriC Sequence	cttgttgatattctgttttttcttttttagTTTTCCACAtgaaaaatagttgaaaacaatagcggtgtccccttaaaatggcTTTTCCACAggtTGTGGAGAAcccaaattaacagtgttaatttaTTTTCCACAggtTGTGGAAAAactaactattatccatcgttcTGTGGAAAActagaatagtttatggtagaatagttctagaaTTATCCACAagaaggaacctagt
The information of repeat	The following lines contain repeats found, one line each. [1] - repeat length of the first part [2] - starting position of the first part [4] - repeat length of the second part [5] - starting position of the second part [6] - distance of this repeat [7] - calculated evalue of this repeat [8] - repeat sequence For more details, please refer to The Manual of REPuter. 21 82 F 21 126 -1 2.17e-07 ttttccacaggttgtgga[ga]aa 19 106 P 19 106 -1 3.14e-06 aaattaaca[gc]tgttaattt 13 15 R 13 15 0 2.26e-04 ttttttctttttt 15 24 P 15 168 -1 6.34e-04 tt[tc]tagttttccaca 10 82 P 10 167 0 1.44e-02 ttttccacag 10 126 P 10 167 0 1.44e-02 ttttccacag 10 178 F 10 193 0 1.44e-02 tagaatagtt 12 148 R 12 152 -1 3.25e-02 cta[ac]ctattatc 12 197 P 12 201 -1 3.25e-02 ata[ga]ttctagaa 9 30 F 9 126 0 5.77e-02 ttttccaca 9 30 F 9 82 0 5.77e-02 ttttccaca 9 30 P 9 138 0 5.77e-02 ttttccaca 9 82 P 9 138 0 5.77e-02 ttttccaca 9 126 P 9 138 0 5.77e-02 ttttccaca 9 138 F 9 168 0 5.77e-02 tgtggaaaa 8 26 P 8 144 0 2.31e-01 ttagtttt 8 154 F 8 208 0 2.31e-01 attatcca 10 0 P 10 210 -1 4.33e-01 cttgt[tg]gata 10 29 P 10 94 -1 4.33e-01 gtt[tc]tccaca 10 33 F 10 212 -1 4.33e-01 tccaca[ta]gaa 10 93 P 10 209 -1 4.33e-01 ttgtgga[gt]aa 10 94 F 10 168 -1 4.33e-01 tgtgga[ga]aac 10 125 F 10 208 -1 4.33e-01 att[ta]tccaca 10 137 P 10 209 -1 4.33e-01 ttgtgga[at]aa 7 3 R 7 45 0 9.24e-01 gttgata 7 44 F 7 196 0 9.24e-01 aatagtt 7 44 F 7 181 0 9.24e-01 aatagtt 7 44 P 7 150 0 9.24e-01 aatagtt 7 63 C 7 86 0 9.24e-01 ggtgtcc 7 63 C 7 130 0 9.24e-01 ggtgtcc 7 101 R 7 101 0 9.24e-01 aacccaa 7 122 R 7 122 0 9.24e-01 tttattt 7 144 F 7 173 0 9.24e-01 aaaacta 7 150 P 7 181 0 9.24e-01 aactatt 7 150 P 7 196 0 9.24e-01 aactatt 7 177 F 7 203 0 9.24e-01 ctagaat 9 0 C 9 142 -1 1.56e+00 ctt[gt]ttgat 9 10 F 9 19 -1 1.56e+00 ttct[gt]tttt 9 10 R 9 15 -1 1.56e+00 ttct[gt]tttt 9 29 P 9 48 -1 1.56e+00 gttttc[ca]ac 9 39 P 9 124 -1 1.56e+00 tg[ag]aaaata 9 40 F 9 172 -1 1.56e+00 gaaaa[ac]tag 9 44 R 9 47 -1 1.56e+00 aa[ta]agttga 9 48 F 9 169 -1 1.56e+00 gt[tg]gaaaac 9 82 F 9 209 -1 1.56e+00 tt[ta]tccaca 9 82 P 9 94 -1 1.56e+00 tt[tc]tccaca 9 94 P 9 126 -1 1.56e+00 tgtgga[ga]aa 9 124 F 9 153 -1 1.56e+00 tatt[ta]tcca 9 168 P 9 209 -1 1.56e+00 tgtgga[at]aa 6 4 R 6 197 0 3.70e+00 ttgata

Refseq	NC_002737.1
Legend	Figure1 shows the Z-curves for the original sequence. Figure2 shows the Z-curves for the rotated sequence beginning and ending in dif site or the maximum of the GC disparity curve. Short vertical red line indicates the indicator gene (such as dnaA, dnaN, gidA, hemE etc) location, and short up vertical dark blue arrow indicates the identified oriC location, short down vertical brown arrow indicates dif site location. Purple peaks with the diamonds indicates the DnaA box clusters.
	Figure 1
	Figure 2