DoriC database

DoriC accession number ORI10010013
Organism Mycobacterium leprae TN
RefSeq NC_002677.1
Topology Circular
Lineage Bacteria, Actinobacteria, Actinobacteridae, Actinomycetales, Corynebacterineae, Mycobacteriaceae, Mycobacterium.
Chromosome size 3268203 nt
Chromosome GC content 0.578
OriC length 514 nt
OriC AT content 0.5409
The number of DnaA box 3
The location of oriC region 1567..2080 nt
The location of dnaA gene 1..1566 nt
The extremes of GC disparity 1966 nt (minimum), 1707651 nt (maximum)
Note -
OriC Sequence

ctttcgatgcgcaacacatactttctccagaaaaacttcttgcacttaagtcacatcagtcacatttccaaagtgtgtatatttcTGTGGACAAactaagtatactgacatgcaacaatccttgatttcatgcacacccatagtcgatccacaacggcgaatcgcagattctttaTTATCAACActgacatccacacctcaacagctcatctagctcaacaaaatccggTTATCCACAagatccacaccctttaatactgatactaagatttcttcgtgttcttatttaaaaaatgatgctggggatacagcatgccacgatgtgacggcaacctcagccgtcaccgttgacgctactttcaaggtggcactcgaagatctacgtttgctcttcgactactgttagggacgtcgtggtgcactatgtgtcaccgacgttcgttacagtgggctcacgctagcgggggcggaggctagccgttggatttcaacgatttttaggtgaaggggcgcc

The information of repeat
The following lines contain repeats found, one line each.
[1] - repeat length of the first part
[2] - starting position of the first part
[4] - repeat length of the second part
[5] - starting position of the second part
[6] - distance of this repeat
[7] - calculated evalue of this repeat
[8] - repeat sequence

For more details, please refer to The Manual of REPuter.

9 189 F 9 240 0 2.83e-01 atccacacc
9 190 R 9 190 0 2.83e-01 tccacacct
9 326 C 9 476 0 2.83e-01 cggcaacct
9 460 R 9 460 0 2.83e-01 gcgggggcg
9 492 R 9 492 0 2.83e-01 gatttttag
11 13 R 11 125 -1 5.85e-01 acac[ag]tacttt
11 103 F 11 183 -1 5.85e-01 actgacat[gc]ca
8 43 P 8 43 0 1.13e+00 acttaagt
8 48 F 8 57 0 1.13e+00 agtcacat
8 49 P 8 319 0 1.13e+00 gtcacatc
8 56 R 8 181 0 1.13e+00 cagtcaca
8 98 P 8 98 0 1.13e+00 agtatact
8 145 F 8 239 0 1.13e+00 gatccaca
8 146 F 8 231 0 1.13e+00 atccacaa
8 191 R 8 241 0 1.13e+00 ccacacct
8 287 R 8 287 0 1.13e+00 taaaaaat
8 322 P 8 337 0 1.13e+00 gtgacggc
8 412 R 8 412 0 1.13e+00 cgtggtgc
8 455 P 8 455 0 1.13e+00 cgctagcg
8 471 P 8 471 0 1.13e+00 ggctagcc
10 10 R 10 146 -1 2.13e+00 gcaacac[ac]ta
10 114 C 10 400 -1 2.13e+00 acaatcc[tc]tg
10 128 F 10 188 -1 2.13e+00 cat[gc]cacacc
10 129 F 10 240 -1 2.13e+00 at[gc]cacaccc
7 13 C 7 73 0 4.54e+00 acacata
7 13 P 7 422 0 4.54e+00 acacata
7 18 F 7 354 0 4.54e+00 tactttc
7 48 R 7 181 0 4.54e+00 agtcaca
7 58 P 7 320 0 4.54e+00 gtcacat
7 73 R 7 422 0 4.54e+00 tgtgtat
7 79 R 7 169 0 4.54e+00 tatttct
7 101 F 7 254 0 4.54e+00 atactga
7 123 F 7 483 0 4.54e+00 gatttca
7 138 R 7 257 0 4.54e+00 catagtc
7 140 P 7 392 0 4.54e+00 tagtcga
7 146 F 7 189 0 4.54e+00 atccaca
7 151 R 7 326 0 4.54e+00 caacggc
7 151 P 7 476 0 4.54e+00 caacggc
7 160 R 7 349 0 4.54e+00 atcgcag
7 168 R 7 268 0 4.54e+00 ttcttta
7 189 F 7 231 0 4.54e+00 atccaca
7 197 F 7 214 0 4.54e+00 ctcaaca
7 207 R 7 376 0 4.54e+00 catctag
7 220 C 7 495 0 4.54e+00 aaaatcc
7 231 F 7 240 0 4.54e+00 atccaca
7 234 C 7 276 0 4.54e+00 cacaaga
7 242 R 7 242 0 4.54e+00 ccacacc
7 340 F 7 427 0 4.54e+00 gtcaccg
7 355 R 7 355 0 4.54e+00 actttca
7 367 R 7 450 0 4.54e+00 gcactcg

Refseq NC_002677.1
Legend Figure1 shows the Z-curves for the original sequence. Figure2 shows the Z-curves for the rotated sequence beginning and ending in dif site or the maximum of the GC disparity curve. Short vertical red line indicates the indicator gene (such as dnaA, dnaN, gidA, hemE etc) location, and short up vertical dark blue arrow indicates the identified oriC location, short down vertical brown arrow indicates dif site location. Purple peaks with the diamonds indicates the DnaA box clusters.
Figure 1
zcurve
Figure 2
zcurve

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