DoriC database

DoriC accession number ORI10010012
Organism Lactococcus lactis subsp. lactis Il1403
RefSeq NC_002662.1
Topology Circular
Lineage Bacteria, Firmicutes, Lactobacillales, Streptococcaceae, Lactococcus.
Chromosome size 2365589 nt
Chromosome GC content 0.3533
OriC length 156 nt
OriC AT content 0.7115
The number of DnaA box 3
The location of oriC region 1726..1881 nt
The location of dnaA gene 358..1725 nt
The extremes of GC disparity 64 nt (minimum), 1264272 nt (maximum)
Note -
OriC Sequence

accTGTGGAAAActcaaggacttataaaatgtttattctttaaTTATCCACAggggaaaagcttatacttctaagtggatttgtcttatacagaTTATCCACAggacctactactattactattatatttataaaaagaaattataaaggaatctc

The information of repeat
The following lines contain repeats found, one line each.
[1] - repeat length of the first part
[2] - starting position of the first part
[4] - repeat length of the second part
[5] - starting position of the second part
[6] - distance of this repeat
[7] - calculated evalue of this repeat
[8] - repeat sequence

For more details, please refer to The Manual of REPuter.

12 42 F 12 93 0 4.08e-04 attatccacagg
12 32 C 12 132 -1 1.47e-02 tt[at]ttctttaat
12 107 F 12 113 -1 1.47e-02 cta[ct]tactatta
9 124 R 9 124 0 2.61e-02 atatttata
11 1 P 11 43 -1 5.39e-02 cctgtgga[at]aa
11 1 P 11 94 -1 5.39e-02 cctgtgga[at]aa
11 25 R 11 125 -1 5.39e-02 aaaat[ga]tttat
8 21 F 8 128 0 1.04e-01 ttataaaa
8 111 F 8 117 0 1.04e-01 tactatta
8 127 P 8 127 0 1.04e-01 tttataaa
7 10 R 7 10 0 4.18e-01 aactcaa
7 21 F 7 141 0 4.18e-01 ttataaa
7 21 P 7 127 0 4.18e-01 ttataaa
7 61 F 7 84 0 4.18e-01 cttatac
7 122 R 7 122 0 4.18e-01 ttatatt
7 127 P 7 141 0 4.18e-01 tttataa
7 128 F 7 141 0 4.18e-01 ttataaa
7 134 R 7 134 0 4.18e-01 aaagaaa
9 21 R 9 24 -1 7.05e-01 tt[ag]taaaat
9 78 C 9 131 -1 7.05e-01 attt[gt]tctt
9 81 C 9 89 -1 7.05e-01 tgtct[ta]ata
9 107 F 9 110 -1 7.05e-01 ctacta[ct]ta
9 108 F 9 117 -1 7.05e-01 tacta[ct]tat
6 6 F 6 54 0 1.67e+00 ggaaaa
6 20 F 6 61 0 1.67e+00 cttata
6 20 F 6 84 0 1.67e+00 cttata
6 21 P 6 21 0 1.67e+00 ttataa
6 21 P 6 141 0 1.67e+00 ttataa
6 22 C 6 124 0 1.67e+00 tataaa
6 29 R 6 78 0 1.67e+00 tgttta
6 33 R 6 83 0 1.67e+00 tattct
6 35 P 6 134 0 1.67e+00 ttcttt
6 39 R 6 39 0 1.67e+00 ttaatt
6 40 P 6 40 0 1.67e+00 taatta
6 41 F 6 139 0 1.67e+00 aattat
6 42 R 6 113 0 1.67e+00 attatc
6 42 R 6 119 0 1.67e+00 attatc
6 45 P 6 74 0 1.67e+00 atccac
6 51 R 6 51 0 1.67e+00 agggga
6 55 R 6 55 0 1.67e+00 gaaaag
6 58 P 6 58 0 1.67e+00 aagctt
6 69 R 6 149 0 1.67e+00 tctaag
6 74 P 6 96 0 1.67e+00 gtggat
6 93 R 6 113 0 1.67e+00 attatc
6 93 R 6 119 0 1.67e+00 attatc
6 101 R 6 101 0 1.67e+00 caggac
6 120 R 6 120 0 1.67e+00 tattat
6 121 F 6 140 0 1.67e+00 attata
6 124 C 6 142 0 1.67e+00 atattt
6 124 C 6 129 0 1.67e+00 atattt

Refseq NC_002662.1
Legend Figure1 shows the Z-curves for the original sequence. Figure2 shows the Z-curves for the rotated sequence beginning and ending in dif site or the maximum of the GC disparity curve. Short vertical red line indicates the indicator gene (such as dnaA, dnaN, gidA, hemE etc) location, and short up vertical dark blue arrow indicates the identified oriC location, short down vertical brown arrow indicates dif site location. Purple peaks with the diamonds indicates the DnaA box clusters.
Figure 1
zcurve
Figure 2
zcurve

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