DoriC database

DoriC accession number ORI10010001
Organism Mycoplasma genitalium G37
RefSeq NC_000908.1
Topology Circular
Lineage Bacteria, Firmicutes, Mollicutes, Mycoplasmataceae, Mycoplasma.
Chromosome size 580076 nt
Chromosome GC content 0.3169
OriC length 642 nt
OriC AT content 0.7212
The number of DnaA box 3
The location of oriC region 578582..579223 nt
The location of dnaA gene 577268..578581 nt
The extremes of GC disparity 780 nt (minimum), 294968 nt (maximum)
Note Note that the DnaA box motif (ttttccaca) was looked for with no more than one mismatch instead of E. coli perfect DnaA box (ttatccaca).
OriC Sequence

tattcttctataacattgtcaagaatgatagttaaaattctcgaaattgggatattaactgctttggagtaatttctaactttttgtcatactctttgacttgtatagaagtgtacacctgtatctagtttttcttggcgttcaacaggaactattcctggtatttttgttttaggttggggaggaataggctgtggttgtgtgaattgtTGTTGAAAAttttgatttttttgctgtaagaaaccattattatgatattgaaaattttgttcctcttgaaaatatctctctttttttggTTTTCCAGAaaaatttgatgaaaaagatttttcttcatttcaattttcaagattattttcattttgttgatttatttgctcaggctgttgaaatgaattattttttgatcaaaaagattttggaaaggttttttcaaaagcagataaaggtccaaaatcaaatgaagatgaatctttgtcaaaagatgtttcttctctttttgacaaattttgtttttgattaaacttatttttattttggggtgttactttttctttTATGGAAAAcaaatcttcttctaaaagactttgttctgggtcatcatcttgtgctaaatcaaagaaaaaacgtttctttttgtta

The information of repeat
The following lines contain repeats found, one line each.
[1] - repeat length of the first part
[2] - starting position of the first part
[4] - repeat length of the second part
[5] - starting position of the second part
[6] - distance of this repeat
[7] - calculated evalue of this repeat
[8] - repeat sequence

For more details, please refer to The Manual of REPuter.

18 312 F 18 402 -1 9.11e-05 tttgat[gc]aaaaagatttt
15 416 R 15 416 0 1.08e-04 ttttggaaaggtttt
15 567 R 15 567 0 1.08e-04 aaatcttcttctaaa
14 400 P 14 400 0 4.32e-04 tttttgatcaaaaa
15 320 F 15 479 -1 4.86e-03 aaaagat[tg]tttcttc
12 212 F 12 257 0 6.91e-03 ttgaaaattttg
14 221 F 14 365 -1 1.81e-02 ttgattt[ta]tttgct
14 351 F 14 525 -1 1.81e-02 ttatttt[ct]attttg
11 124 C 11 405 0 2.76e-02 ctagtttttct
11 163 R 11 506 0 2.76e-02 tttttgtttta
11 319 F 11 409 0 2.76e-02 aaaaagatttt
11 525 R 11 525 0 2.76e-02 ttatttttatt
13 216 F 13 504 -1 6.74e-02 aaattttg[at]tttt
13 219 R 13 290 -1 6.74e-02 ttttg[ag]ttttttt
13 298 P 13 554 -1 6.74e-02 gttttcca[gt]aaaa
13 421 P 13 620 -1 6.74e-02 gaaa[gc]gttttttc
10 261 F 10 504 0 1.11e-01 aaattttgtt
10 273 P 10 341 0 1.11e-01 tcttgaaaat
10 293 R 10 293 0 1.11e-01 ttttggtttt
10 316 C 10 545 0 1.11e-01 atgaaaaaga
10 332 P 10 386 0 1.11e-01 ttcatttcaa
10 473 P 10 497 0 1.11e-01 tttgtcaaaa
10 616 C 10 628 0 1.11e-01 caaagaaaaa
12 127 R 12 627 -1 2.49e-01 gtttttctt[gt]gc
12 140 P 12 268 -1 2.49e-01 ttcaa[cg]aggaac
12 161 F 12 526 -1 2.49e-01 tattttt[ga]tttt
12 214 F 12 306 -1 2.49e-01 gaaaa[ta]tttgat
12 254 P 12 340 -1 2.49e-01 at[ac]ttgaaaatt
12 312 P 12 400 -1 2.49e-01 tttgat[gc]aaaaa
12 318 C 12 571 -1 2.49e-01 gaa[ag]aagatttt
12 352 R 12 548 -1 2.49e-01 tattttc[at]tttt
12 355 F 12 629 -1 2.49e-01 tttc[at]ttttgtt
12 394 R 12 511 -1 2.49e-01 aatta[tg]tttttg
12 400 F 12 512 -1 2.49e-01 tttttgat[ct]aaa
12 402 P 12 512 -1 2.49e-01 ttt[ga]atcaaaaa
12 422 R 12 553 -1 2.49e-01 aaaggt[ta]ttttc
12 548 P 12 614 -1 2.49e-01 tttttcttt[tg]at
9 124 R 9 400 0 4.42e-01 ctagttttt
9 126 R 9 494 0 4.42e-01 agtttttct
9 164 R 9 164 0 4.42e-01 ttttgtttt
9 164 F 9 507 0 4.42e-01 ttttgtttt
9 212 P 9 340 0 4.42e-01 ttgaaaatt
9 220 P 9 452 0 4.42e-01 tttgatttt
9 286 F 9 492 0 4.42e-01 tctcttttt
9 330 P 9 458 0 4.42e-01 tcttcattt
9 407 P 9 494 0 4.42e-01 tcaaaaaga
9 414 P 9 449 0 4.42e-01 gattttgga
9 507 R 9 507 0 4.42e-01 ttttgtttt
9 529 R 9 529 0 4.42e-01 ttttatttt
9 548 R 9 629 0 4.42e-01 tttttcttt

Refseq NC_000908.1
Legend Figure1 shows the Z-curves for the original sequence. Figure2 shows the Z-curves for the rotated sequence beginning and ending in dif site or the maximum of the GC disparity curve. Short vertical red line indicates the indicator gene (such as dnaA, dnaN, gidA, hemE etc) location, and short up vertical dark blue arrow indicates the identified oriC location, short down vertical brown arrow indicates dif site location. Purple peaks with the diamonds indicates the DnaA box clusters.
Figure 1
zcurve
Figure 2
zcurve

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